peptide_deriver Namespace Reference

Functions
BooleanOptionKey const	peptide_deriver ("peptide_deriver")
IntegerVectorOptionKey const	pep_lengths ("peptide_deriver:pep_lengths")
BooleanOptionKey const	skip_zero_isc ("peptide_deriver:skip_zero_isc")
BooleanOptionKey const	dump_peptide_pose ("peptide_deriver:dump_peptide_pose")
BooleanOptionKey const	dump_cyclic_poses ("peptide_deriver:dump_cyclic_poses")
BooleanOptionKey const	dump_prepared_pose ("peptide_deriver:dump_prepared_pose")
BooleanOptionKey const	dump_report_file ("peptide_deriver:dump_report_file")
StringVectorOptionKey const	restrict_receptors_to_chains ("peptide_deriver:restrict_receptors_to_chains")
StringVectorOptionKey const	restrict_partners_to_chains ("peptide_deriver:restrict_partners_to_chains")
BooleanOptionKey const	do_minimize ("peptide_deriver:do_minimize")
RealOptionKey const	optimize_cyclic_threshold ("peptide_deriver:optimize_cyclic_threshold")
StringOptionKey const	report_format ("peptide_deriver:report_format")
BooleanOptionKey const	report_gzip ("peptide_deriver:report_gzip")

Variables
basic::options::StringOptionKey	chain_to_derive_from ("peptide_deriver:chain_to_derive_from")
basic::options::RealOptionKey	length_to_derive ("peptide_deriver:length_to_derive")
basic::options::BooleanOptionKey	optimize ("peptide_deriver:optimize")
basic::options::StringOptionKey	dump_peptide_pdb ("peptide_deriver:dump_peptide_pdb")

Function Documentation

do_minimize()

BooleanOptionKey const peptide_deriver::do_minimize

(

"peptide_deriver:do_minimize"

)

dump_cyclic_poses()

BooleanOptionKey const peptide_deriver::dump_cyclic_poses

(

"peptide_deriver:dump_cyclic_poses"

)

dump_peptide_pose()

BooleanOptionKey const peptide_deriver::dump_peptide_pose

(

"peptide_deriver:dump_peptide_pose"

)

dump_prepared_pose()

BooleanOptionKey const peptide_deriver::dump_prepared_pose

(

"peptide_deriver:dump_prepared_pose"

)

dump_report_file()

BooleanOptionKey const peptide_deriver::dump_report_file

(

"peptide_deriver:dump_report_file"

)

optimize_cyclic_threshold()

RealOptionKey const peptide_deriver::optimize_cyclic_threshold

(

"peptide_deriver:optimize_cyclic_threshold"

)

pep_lengths()

IntegerVectorOptionKey const peptide_deriver::pep_lengths

(

"peptide_deriver:pep_lengths"

)

peptide_deriver()

BooleanOptionKey const peptide_deriver::peptide_deriver

(

"peptide_deriver"

)

report_format()

StringOptionKey const peptide_deriver::report_format

(

"peptide_deriver:report_format"

)

report_gzip()

BooleanOptionKey const peptide_deriver::report_gzip

(

"peptide_deriver:report_gzip"

)

restrict_partners_to_chains()

StringVectorOptionKey const peptide_deriver::restrict_partners_to_chains

(

"peptide_deriver:restrict_partners_to_chains"

)

restrict_receptors_to_chains()

StringVectorOptionKey const peptide_deriver::restrict_receptors_to_chains

(

"peptide_deriver:restrict_receptors_to_chains"

)

skip_zero_isc()

BooleanOptionKey const peptide_deriver::skip_zero_isc

(

"peptide_deriver:skip_zero_isc"

)

Variable Documentation

chain_to_derive_from

basic::options::StringOptionKey peptide_deriver::chain_to_derive_from("peptide_deriver:chain_to_derive_from")

(

"peptide_deriver:chain_to_derive_from"

)

Referenced by derive(), and main().

dump_peptide_pdb

basic::options::StringOptionKey peptide_deriver::dump_peptide_pdb("peptide_deriver:dump_peptide_pdb")

(

"peptide_deriver:dump_peptide_pdb"

)

Referenced by derive(), and main().

length_to_derive

basic::options::RealOptionKey peptide_deriver::length_to_derive("peptide_deriver:length_to_derive")

(

"peptide_deriver:length_to_derive"

)

Referenced by derive(), and main().

optimize

basic::options::BooleanOptionKey peptide_deriver::optimize("peptide_deriver:optimize")

(

"peptide_deriver:optimize"

)

Referenced by derive(), main(), and optimize_embedding().