apps::pilot::KicSandbox Class Reference

#include <KicSandbox.hh>

Inheritance diagram for apps::pilot::KicSandbox:

Public Member Functions
	KicSandbox (int argc, char *argv[])
Public Member Functions inherited from utility::VirtualBase
	VirtualBase ()=default
	Default constructor. More...
virtual	~VirtualBase ()=default
	The virtual destructor is one of the main reasons for the VirtualBase class. More...
	VirtualBase (VirtualBase const &)=default
	VirtualBase (VirtualBase &&)=default
VirtualBase &	operator= (VirtualBase const &)=default
VirtualBase &	operator= (VirtualBase &&)=default

Public Attributes
Pose	pose
Loop	loop
LoopMoverOP	mover
LoopProtocolOP	protocol
IndexList	iterations

Constructor & Destructor Documentation

KicSandbox()

apps::pilot::KicSandbox::KicSandbox	(	int	argc,
		char *	argv[]
	)

References argv, utility::io::oc::cout, numeric::random::RandomGenerator::get_seed(), basic::init(), autocorrelation::iterations, internal_coordinates::loop, NEW_OPT, option, test.G203_Module_SQLPDB::pdb_path, beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file(), basic::options::OptionKeys::docking::ligand::protocol, numeric::random::rg(), basic::options::OptionKeys::inout::dbms::user, and utility_exit_with_message.

Member Data Documentation

iterations

IndexList apps::pilot::KicSandbox::iterations

Referenced by pyrosetta.distributed.utility.log.ProgressLogger::increment().

loop

Loop apps::pilot::KicSandbox::loop

mover

LoopMoverOP apps::pilot::KicSandbox::mover

pose

Pose apps::pilot::KicSandbox::pose

Referenced by pyrosetta.bindings.pose.PoseScoreAccessor::__delitem__(), pyrosetta.bindings.scores.core.PoseCacheAccessor::__delitem__(), pyrosetta.bindings.scores.extra_scores.ExtraScoresAccessorBase::__delitem__(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessorBase::__delitem__(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricStringDataAccessor::__delitem__(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricRealDataAccessor::__delitem__(), pyrosetta.bindings.pose.PoseResidueAccessor::__getitem__(), pyrosetta.bindings.pose.PoseResidueLabelAccessor::__getitem__(), pyrosetta.bindings.pose.PoseResidueAccessor::__iadd__(), pyrosetta.bindings.pose.PoseResidueAccessor::__imul__(), pyrosetta.bindings.pose.PoseResidueAccessor::__iter__(), pyrosetta.bindings.pose.PoseResidueAccessor::__len__(), pyrosetta.bindings.pose.PoseResidueLabelAccessor::__len__(), pyrosetta.bindings.pose.PoseResidueLabelAccessor::__repr__(), pyrosetta.bindings.pose.PoseResidueAccessor::__reversed__(), pyrosetta.bindings.pose.PoseScoreAccessor::__setitem__(), pyrosetta.bindings.scores.extra_scores.ExtraScoresAccessorBase::__setitem__(), pyrosetta.bindings.scores.base.PoseCacheAccessorBase::_get_sm_data_dict(), pyrosetta.bindings.scores.base.PoseCacheAccessorBase::_has_reserved_custom_metric_keys(), pyrosetta.bindings.scores.base.PoseCacheAccessorBase::_maybe_delete_keys_from_sm_data(), pyrosetta.bindings.scores.base.PoseCacheAccessorBase::_maybe_delete_reserved_keys_from_sm_data(), pyrosetta.bindings.pose.PoseScoreAccessor::all(), pyrosetta.bindings.scores.energies.EnergiesAccessor::all(), pyrosetta.bindings.scores.extra_scores.ExtraFloatScoresDataAccessor::all(), pyrosetta.bindings.scores.extra_scores.ExtraStringScoresDataAccessor::all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricStringDataAccessor::all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricRealDataAccessor::all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricCompositeStringDataAccessor::all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricCompositeRealDataAccessor::all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricPerResidueStringDataAccessor::all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricPerResidueRealDataAccessor::all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricPerResidueProbabilitiesDataAccessor::all(), pyrosetta.bindings.scores.base.PoseCacheAccessorBase::apply(), pyrosetta.bindings.pose.PoseScoreAccessor::clear(), pyrosetta.bindings.scores.core.PoseCacheAccessor::clear(), pyrosetta.bindings.scores.energies.EnergiesAccessor::clear(), pyrosetta.bindings.scores.extra_scores.ExtraScoresAccessorBase::clear(), pyrosetta.bindings.scores.extra_scores.ExtraScoresAccessor::clear(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor::clear(), pyrosetta.distributed.packed_pose.core.PackedPose::clone(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor::composite_real(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor::composite_string(), pyrosetta.distributed.packed_pose.core.PackedPose::empty(), pyrosetta.bindings.pose.PoseScoreAccessor::energies(), pyrosetta.bindings.scores.core.PoseCacheAccessor::energies(), pyrosetta.bindings.pose.PoseScoreAccessor::extra(), pyrosetta.bindings.scores.core.PoseCacheAccessor::extra(), main(), pyrosetta.bindings.scores.core.PoseCacheAccessor::metrics(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor::per_residue_probabilities(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor::per_residue_real(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor::per_residue_string(), pyrosetta.bindings.scores.extra_scores.ExtraScoresAccessor::real(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor::real(), pyrosetta.bindings.scores.extra_scores.ExtraScoresAccessor::string(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor::string(), test.T300_PyJobDistributor.TestPyJobDistributor::test_jd(), test.T300_PyJobDistributor.TestPyJobDistributor::test_jd_at(), test.T300_PyJobDistributor.TestPyJobDistributor::test_jd_serializable_scores(), test.T300_PyJobDistributor.TestPyJobDistributor::test_jd_unserializable_scores(), test.T010_LoadPDB.LoadPDBTest::test_pdbstring_io(), pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor::test_pose_cache(), test.T010_LoadPDB.LoadPDBTest::test_roundtrip_file(), test.T010_LoadPDB.LoadPDBTest::test_roundtrip_pdb(), test.T010_LoadPDB.LoadPDBTest::test_roundtrip_scored_pdb(), and pyrosetta.distributed.packed_pose.core.PackedPose::update_scores().

protocol

LoopProtocolOP apps::pilot::KicSandbox::protocol

Referenced by main().

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The documentation for this class was generated from the following file:

• src/apps/pilot/kale/kic_refactor/KicSandbox.hh