test.T120_core Namespace Reference

Variables
	match_pose = pyrosetta.pose_from_sequence('ASDF')
	sfxn = rosetta.core.scoring.get_score_function()
	rotamer_sets = rosetta.core.pack.rotamer_set.RotamerSetsFactory.create_rotamer_sets(match_pose)

Variable Documentation

match_pose

test.T120_core.match_pose = pyrosetta.pose_from_sequence('ASDF')

Referenced by HbondZinc.find_zinc().

rotamer_sets

test.T120_core.rotamer_sets = rosetta.core.pack.rotamer_set.RotamerSetsFactory.create_rotamer_sets(match_pose)

Referenced by core::pack::annealer::FixbbSimAnnealer.run().

sfxn

test.T120_core.sfxn = rosetta.core.scoring.get_score_function()

Referenced by FindOptimalHydrophobicThk.apply(), MembraneMinMover.apply(), MembraneViewMover.apply(), MembraneSfxnMover.apply(), MembraneRelaxMover.apply(), MembraneSampleMover.apply(), aramid_main(), build_and_score_res1_against_res2(), calc_ddg(), calc_rmsf_and_avrg(), calculate_average_residue_scores(), calculate_binding_energy(), myspace.check_clash(), check_interface_symmetry(), check_structures(), mp_ddG.compute_ddG(), create_mingraph_for_focused_residue_pair(), create_score_function_from_weights_and_refEs(), designloop(), determine_if_at_local_minimum_analytic(), determine_if_at_local_minimum_numeric(), BuildFullModel.fill_and_sample_full_model(), fix_prolines(), get_complex_score(), get_interface_residues(), get_rotset(), get_unbound_protein_score(), gradient_magnitude_for_conformation(), gradual_minimization(), HemeBindingMover.HemeBindingMover(), kinclose(), main(), make_mutations(), measure_sequence_recovery(), mutate_and_score_RNP(), my_main(), MembraneViewMover.new_fastrelax_cycle(), MainWindow.on_button_run_packer_clicked(), opt_bicelle_params(), opt_double_vesicle_params(), opt_vesicle_params(), perturb_and_rescore(), perturb_bb_and_relax(), protocols::jd2::RECONMPIJobDistributor.pick_consensus_AA(), plot_scoreterm(), TCDock.precompute_intra(), predict_AE(), print_header(), print_verbose_ddgs(), myspace.ramp_repack_min(), read_silent_input_as_library(), relax_with_restraints_on_constres(), repackmin(), myspace::Scheduler.run_md(), scan_energy(), scan_Evalue(), myspace::DataClass.scan_Evalue(), myspace.scan_Evalue(), myspace::DataClass.scan_Evalue_and_write(), scan_neutral(), scan_rotamer(), myspace::Scheduler.Scheduler(), score_residue_pair(), score_rnp(), scoreall(), myspace.setup_packer(), setup_score_function(), ScoreFunctionFingerprintMover.sfxn(), simple_minimization(), simple_packing(), ss_test(), sweep_params_from_match_constraint_file(), test(), myspace.test_bbgauss(), myspace.test_loophash(), myspace.test_MD(), test_NMmin(), myspace.test_NMrelaxer(), test_NMrelaxer(), test_protein_rna(), myspace.test_recombine(), myspace.test_relax(), thread_fxn(), unbound_protein_minimization(), write_respair_scores_to_database(), and write_scores_and_hbond_geoms_to_database().