oop_dock_design.cc File Reference

#include <core/pose/Pose.hh>
#include <core/scoring/ScoreFunction.fwd.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/constraints/util.hh>
#include <protocols/jd2/JobDistributor.hh>
#include <protocols/ncbb/oop/OopDockDesignProtocol.hh>
#include <protocols/ncbb/util.hh>
#include <protocols/simple_moves/BackboneMover.fwd.hh>
#include <protocols/viewer/viewers.hh>
#include <protocols/pose_metric_calculators/PackstatCalculator.hh>
#include <devel/init.hh>
#include <basic/options/util.hh>
#include <basic/options/option.hh>
#include <basic/Tracer.hh>
#include <utility/excn/Exceptions.hh>
#include <basic/options/keys/OptionKeys.hh>

Namespaces
	oddm

Functions
void *	my_main (void *)
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("ODDM")
RealOptionKey const	oddm::mc_temp ("oddm::mc_temp")
RealOptionKey const	oddm::pert_mc_temp ("oddm::pert_mc_temp")
RealOptionKey const	oddm::pert_dock_rot_mag ("oddm::pert_dock_rot_mag")
RealOptionKey const	oddm::pert_dock_trans_mag ("oddm::pert_dock_trans_mag")
RealOptionKey const	oddm::pert_pep_small_temp ("oddm::pert_pep_small_temp")
RealOptionKey const	oddm::pert_pep_small_H ("oddm::pert_pep_small_H")
RealOptionKey const	oddm::pert_pep_small_L ("oddm::pert_pep_small_L")
RealOptionKey const	oddm::pert_pep_small_E ("oddm::pert_pep_small_E")
RealOptionKey const	oddm::pert_pep_shear_temp ("oddm::pert_pep_shear_temp")
RealOptionKey const	oddm::pert_pep_shear_H ("oddm::pert_pep_shear_H")
RealOptionKey const	oddm::pert_pep_shear_L ("oddm::pert_pep_shear_L")
RealOptionKey const	oddm::pert_pep_shear_E ("oddm::pert_pep_shear_E")
IntegerOptionKey const	oddm::pert_pep_num_rep ("oddm::pert_pep_num_rep")
IntegerOptionKey const	oddm::pert_num ("oddm::pert_num")
IntegerOptionKey const	oddm::dock_design_loop_num ("oddm::dock_design_loop_num")
BooleanOptionKey const	oddm::no_design ("oddm::no_design")
BooleanOptionKey const	oddm::final_design_min ("oddm::final_design_min")
BooleanOptionKey const	oddm::use_soft_rep ("oddm::use_soft_rep")
BooleanOptionKey const	oddm::mc_initial_pose ("oddm::mc_initial_pose")
BooleanOptionKey const	oddm::oop_design_first ("oddm::oop_design_first")
BooleanOptionKey const	oddm::pymol ("oddm::pymol")
BooleanOptionKey const	oddm::keep_history ("oddm::keep_history")
RealOptionKey const	oddm::desn_mc_temp ("oddm::desn_mc_temp")

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, oddm::desn_mc_temp, oddm::dock_design_loop_num, test.T009_Exceptions::e, oddm::final_design_min, basic::init(), oddm::keep_history, oddm::mc_initial_pose, oddm::mc_temp, my_main(), oddm::no_design, oddm::oop_design_first, option, oddm::pert_dock_rot_mag, oddm::pert_dock_trans_mag, oddm::pert_mc_temp, oddm::pert_num, oddm::pert_pep_num_rep, oddm::pert_pep_shear_E, oddm::pert_pep_shear_H, oddm::pert_pep_shear_L, oddm::pert_pep_shear_temp, oddm::pert_pep_small_E, oddm::pert_pep_small_H, oddm::pert_pep_small_L, oddm::pert_pep_small_temp, oddm::pymol, oddm::use_soft_rep, and viewer_main().

my_main()

void* my_main

(

void *

)

References oddm::dock_design_loop_num, utility::options::OptionKeys::options::exit, oddm::final_design_min, pyrosetta.distributed.io::get_score_function(), oddm::keep_history, oddm::mc_initial_pose, oddm::mc_temp, oddm::no_design, oddm::oop_design_first, option, oddm::pert_dock_rot_mag, oddm::pert_dock_trans_mag, oddm::pert_mc_temp, oddm::pert_num, oddm::pert_pep_num_rep, oddm::pert_pep_shear_E, oddm::pert_pep_shear_H, oddm::pert_pep_shear_L, oddm::pert_pep_shear_temp, oddm::pert_pep_small_E, oddm::pert_pep_small_H, oddm::pert_pep_small_L, oddm::pert_pep_small_temp, oddm::pymol, beta_nonlocal::score_fxn, oddm::use_soft_rep, and value.

Referenced by main().

Variable Documentation

TR

basic::Tracer TR("ODDM") ( "ODDM"  )

static