simple_dna_regression_test.cc File Reference

#include <protocols/viewer/viewers.hh>
#include <core/scoring/Energies.hh>
#include <core/scoring/dna/setup.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/methods/EnergyMethodOptions.hh>
#include <core/types.hh>
#include <core/conformation/Residue.hh>
#include <core/pack/pack_rotamers.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pose/Pose.hh>
#include <protocols/dna/util.hh>
#include <devel/init.hh>
#include <core/io/pdb/pdb_writer.hh>
#include <utility/vector1.hh>
#include <ObjexxFCL/format.hh>
#include <iostream>
#include <string>
#include <cstdlib>
#include <basic/Tracer.hh>
#include <core/import_pose/import_pose.hh>
#include <basic/options/keys/OptionKeys.hh>
#include <core/pack/task/ResidueLevelTask.hh>

Functions
void	show_dna_geometry (pose::Pose const &pose)
void	repack_test (pose::Pose &pose)
void	run_tests ()
void *	my_main (void *)
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("apps.pilot.chen.simple_dna_regression_test")

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, test.T009_Exceptions::e, basic::init(), my_main(), and viewer_main().

my_main()

void* my_main

(

void *

)

References utility::options::OptionKeys::options::exit, and run_tests().

Referenced by main().

repack_test()

void repack_test

(

pose::Pose &

pose

)

References basic::options::OptionKeys::matdes::dock::dump_pdb, create_a3b_hbs::ii, create_a3b_hbs::nres, options, beta_nonlocal::pose, oop_conformations::scorefxn, vancomycin::task, and TR.

Referenced by main(), and run_tests().

run_tests()

void run_tests

(

)

The main routine, calls smaller tests.

References beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file, repack_test(), and show_dna_geometry().

Referenced by my_main().

show_dna_geometry()

void show_dna_geometry

(

pose::Pose const &

pose

)

Show details of the internal DNA geometry

References basic::Tracer::Info, beta_nonlocal::pose, and TR.

Referenced by run_tests(), and show_dna_geometry().

Variable Documentation

TR

basic::Tracer TR("apps.pilot.chen.simple_dna_regression_test") ( "apps.pilot.chen.simple_dna_regression_test"  )

static

Referenced by repack_test(), and show_dna_geometry().