PickSSE Class Reference

Public Member Functions
	PickSSE ()
	constructor parses command line and sets up picking More...

Private Member Functions
void	readSSE (std::strig filename)
	Example format: ALPHA_HELIX 8 21 -16.000 4.000 7.000. More...
void	pick_sse ()

Private Attributes
Size	n_res_
utility::vector1< Size >	sse_start
utility::vector1< Size >	sse_end
utility::vector1< char >	sse_type
utility::vector1< Real >	sse_dist
FragmentPicker	my_picker
CompareTotalScore *	comparator

Constructor & Destructor Documentation

PickSSE()

PickSSE::PickSSE ( )

inline

constructor parses command line and sets up picking

References in::file::checkpoint(), basic::options::OptionKeys::nonlocal::chunks, frags::n_candidates(), frags::n_frags(), option, basic::options::OptionKeys::frags::scoring::scoring, basic::options::OptionKeys::relax::sequence, and in::file::vall().

Member Function Documentation

pick_sse()

void PickSSE::pick_sse ( )

inlineprivate

References fi().

readSSE()

void PickSSE::readSSE ( std::strig  filename )

inlineprivate

Example format: ALPHA_HELIX 8 21 -16.000 4.000 7.000.

References getline(), gaussian-sampling::input, line, x, predPRE::y, and predPRE::z.

Member Data Documentation

comparator

CompareTotalScore* PickSSE::comparator

private

my_picker

FragmentPicker PickSSE::my_picker

private

n_res_

Size PickSSE::n_res_

private

sse_dist

utility::vector1<Real> PickSSE::sse_dist

private

sse_end

utility::vector1<Size> PickSSE::sse_end

private

sse_start

utility::vector1<Size> PickSSE::sse_start

private

sse_type

utility::vector1<char> PickSSE::sse_type

private

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The documentation for this class was generated from the following file:

• src/apps/pilot/dgront/fragmentpicker/PickSSE.cc