constellation_list.cc File Reference

#include <iostream>
#include <iomanip>
#include <devel/init.hh>
#include <core/chemical/AA.hh>
#include <core/conformation/Residue.hh>
#include <core/id/AtomID_Map.hh>
#include <core/import_pose/import_pose.hh>
#include <core/io/pdb/pdb_writer.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/optimization/MinimizerOptions.hh>
#include <core/optimization/AtomTreeMinimizer.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/pack_rotamers.hh>
#include <core/pose/Pose.hh>
#include <core/pose/PDBInfo.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/TenANeighborGraph.hh>
#include <core/scoring/TwelveANeighborGraph.hh>
#include <core/scoring/Energies.hh>
#include <core/scoring/EnergyMap.hh>
#include <core/scoring/EnergyGraph.hh>
#include <core/scoring/ScoreType.hh>
#include <core/scoring/ScoreTypeManager.hh>
#include <core/scoring/ScoringManager.hh>
#include <core/scoring/etable/EtableEnergy.hh>
#include <core/scoring/methods/EnergyMethodOptions.hh>
#include <core/scoring/methods/ShortRangeTwoBodyEnergy.hh>
#include <core/scoring/methods/ShortRangeTwoBodyEnergy.fwd.hh>
#include <core/scoring/util.hh>
#include <core/io/pdb/build_pose_as_is.hh>
#include <protocols/rigid/RigidBodyMover.hh>
#include <protocols/backrub/BackrubMover.hh>
#include <protocols/moves/MonteCarlo.hh>
#include <protocols/moves/MoverContainer.hh>
#include <protocols/loops/loop_closure/kinematic_closure/KinematicMover.hh>
#include <protocols/loops/loop_closure/kinematic_closure/KinematicWrapper.hh>
#include <protocols/loops/Loops.hh>
#include <protocols/loops/loops_main.hh>
#include <basic/Tracer.hh>
#include <basic/options/util.hh>
#include <basic/options/option.hh>
#include <basic/options/option_macros.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/after_opts.hh>
#include <utility/vector1.hh>
#include <utility/io/ozstream.hh>

Functions
utility::vector1< char >	list_allowable_mutations (char const starting_aa)
void	zero_occ_for_deleted_atoms (pose::Pose &pose, core::Size seqpos, char const target_aa)
int	main (int argc, char *argv[])
	General testing code. More...

Variables
static basic::Tracer	TR ("apps.pilot.constellation_list.main")

Function Documentation

list_allowable_mutations()

utility::vector1<char> list_allowable_mutations

(

char const

starting_aa

)

Referenced by main().

main()

int main	(	int	argc,
		char *	argv[]
	)

General testing code.

References argv, utility::vectorL< L, T, A >::at(), utility::io::ozstream::clear(), utility::io::ozstream::close(), data, utility::options::OptionKeys::options::exit, create_a3b_hbs::i, basic::init(), create_a3b_hbs::j, list_allowable_mutations(), NEW_OPT, utility::io::ozstream::open(), option, erraser_single_res_analysis::out, pyrosetta.distributed.io::pose_from_file, oop_conformations::scorefxn, basic::options::start_file(), basic::options::OptionKeys::constel::target_chain, TR, utility::io::ozstream::write(), and zero_occ_for_deleted_atoms().

zero_occ_for_deleted_atoms()

void zero_occ_for_deleted_atoms	(	pose::Pose &	pose,
		core::Size	seqpos,
		char const	target_aa
	)

References create_a3b_hbs::i, beta_nonlocal::pose, basic::options::OptionKeys::motifs::target_aa, and TR.

Referenced by main().

Variable Documentation

TR

basic::Tracer TR("apps.pilot.constellation_list.main") ( "apps.pilot.constellation_list.main"  )

static

Referenced by main(), and zero_occ_for_deleted_atoms().