FixbbJobQueen Class Reference

Inheritance diagram for FixbbJobQueen:

Public Member Functions
	FixbbJobQueen ()
	~FixbbJobQueen () override=default
void	append_job_tag_subelements (utility::tag::XMLSchemaDefinition &job_definition_xsd, utility::tag::XMLSchemaComplexTypeGenerator &job_ct_gen) const override
void	append_common_tag_subelements (utility::tag::XMLSchemaDefinition &job_definition_xsd, utility::tag::XMLSchemaComplexTypeGenerator &ct_gen) const override
void	parse_job_definition_tags (utility::tag::TagCOP, utility::vector1< protocols::jd3::standard::PreliminaryLarvalJob > const &) override
protocols::jd3::JobOP	complete_larval_job_maturation (protocols::jd3::LarvalJobCOP larval_job, utility::options::OptionCollectionCOP job_options, utility::vector1< protocols::jd3::JobResultCOP > const &) override
virtual bool	more_jobs_remain ()
void	parse_sfxns_and_taskops (utility::tag::TagCOP tag, basic::datacache::DataMap &datamap) const
	FixbbJobQueen ()
	~FixbbJobQueen ()
virtual void	append_job_tag_subelements (utility::tag::XMLSchemaDefinition &job_definition_xsd, utility::tag::XMLSchemaComplexTypeGenerator &job_ct_gen) const
virtual void	append_common_tag_subelements (utility::tag::XMLSchemaDefinition &job_definition_xsd, utility::tag::XMLSchemaComplexTypeGenerator &ct_gen) const
virtual protocols::jd3::JobOP	complete_larval_job_maturation (protocols::jd3::LarvalJobCOP larval_job, utility::options::OptionCollectionCOP job_options, utility::vector1< protocols::jd3::JobResultCOP > const &)
virtual void	mark_job_as_having_begun (protocols::jd3::LarvalJobCOP)
virtual bool	more_jobs_remain ()
void	parse_sfxns_and_taskops (core::pose::Pose const &pose, utility::tag::TagCOP tag, basic::datacache::DataMap &datamap) const

Constructor & Destructor Documentation

FixbbJobQueen() [1/2]

FixbbJobQueen::FixbbJobQueen ( )

inline

References basic::options::OptionKeys::min_pack, basic::options::OptionKeys::minimize_sidechains, and basic::options::OptionKeys::off_rotamer_pack.

~FixbbJobQueen() [1/2]

FixbbJobQueen::~FixbbJobQueen ( )

overridedefault

FixbbJobQueen() [2/2]

FixbbJobQueen::FixbbJobQueen ( )

inline

References basic::options::OptionKeys::min_pack, basic::options::OptionKeys::minimize_sidechains, and basic::options::OptionKeys::off_rotamer_pack.

~FixbbJobQueen() [2/2]

FixbbJobQueen::~FixbbJobQueen ( )

inline

Member Function Documentation

append_common_tag_subelements() [1/2]

virtual void FixbbJobQueen::append_common_tag_subelements ( utility::tag::XMLSchemaDefinition &  job_definition_xsd, utility::tag::XMLSchemaComplexTypeGenerator &  ct_gen  ) const

inlinevirtual

References utility::tag::XMLSchemaSimpleSubelementList::add_already_defined_subelement(), utility::tag::XMLSchemaComplexTypeGenerator::add_ordered_subelement_set_as_repeatable(), and enumerate_junctions::parser.

append_common_tag_subelements() [2/2]

void FixbbJobQueen::append_common_tag_subelements ( utility::tag::XMLSchemaDefinition &  job_definition_xsd, utility::tag::XMLSchemaComplexTypeGenerator &  ct_gen  ) const

inlineoverride

References utility::tag::XMLSchemaSimpleSubelementList::add_already_defined_subelement(), utility::tag::XMLSchemaComplexTypeGenerator::add_ordered_subelement_set_as_repeatable(), and enumerate_junctions::parser.

append_job_tag_subelements() [1/2]

virtual void FixbbJobQueen::append_job_tag_subelements ( utility::tag::XMLSchemaDefinition &  job_definition_xsd, utility::tag::XMLSchemaComplexTypeGenerator &  job_ct_gen  ) const

inlinevirtual

References utility::tag::XMLSchemaSimpleSubelementList::add_already_defined_subelement(), utility::tag::XMLSchemaComplexTypeGenerator::add_ordered_subelement_set_as_optional(), utility::tag::XMLSchemaComplexTypeGenerator::add_ordered_subelement_set_as_repeatable(), and enumerate_junctions::parser.

append_job_tag_subelements() [2/2]

void FixbbJobQueen::append_job_tag_subelements ( utility::tag::XMLSchemaDefinition &  job_definition_xsd, utility::tag::XMLSchemaComplexTypeGenerator &  job_ct_gen  ) const

inlineoverride

References utility::tag::XMLSchemaSimpleSubelementList::add_already_defined_subelement(), utility::tag::XMLSchemaComplexTypeGenerator::add_ordered_subelement_set_as_optional(), utility::tag::XMLSchemaComplexTypeGenerator::add_ordered_subelement_set_as_repeatable(), and enumerate_junctions::parser.

complete_larval_job_maturation() [1/2]

virtual protocols::jd3::JobOP FixbbJobQueen::complete_larval_job_maturation ( protocols::jd3::LarvalJobCOP  larval_job, utility::options::OptionCollectionCOP  job_options, utility::vector1< protocols::jd3::JobResultCOP > const &    )

inlinevirtual

References basic::options::OptionKeys::jd3::jd3, vancomycin::min_mover, basic::options::OptionKeys::run::min_type, basic::options::OptionKeys::minimize_sidechains, basic::options::OptionKeys::in::file::movemap, test.Workshop6test::pack_mover, parse_sfxns_and_taskops(), beta_nonlocal::pose, beta_nonlocal::score_fxn, beta_sc_scan::seq, TR, and value.

complete_larval_job_maturation() [2/2]

protocols::jd3::JobOP FixbbJobQueen::complete_larval_job_maturation ( protocols::jd3::LarvalJobCOP  larval_job, utility::options::OptionCollectionCOP  job_options, utility::vector1< protocols::jd3::JobResultCOP > const &    )

inlineoverride

References basic::datacache::DataMap::add(), basic::options::OptionKeys::jd3::jd3, vancomycin::min_mover, basic::options::OptionKeys::run::min_type, basic::options::OptionKeys::minimize_sidechains, basic::options::OptionKeys::in::file::movemap, test.Workshop6test::pack_mover, parse_sfxns_and_taskops(), beta_nonlocal::pose, beta_nonlocal::score_fxn, beta_sc_scan::seq, basic::options::standard, TR, and value.

mark_job_as_having_begun()

virtual void FixbbJobQueen::mark_job_as_having_begun ( protocols::jd3::LarvalJobCOP  )

inlinevirtual

more_jobs_remain() [1/2]

virtual bool FixbbJobQueen::more_jobs_remain ( )

inlinevirtual

more_jobs_remain() [2/2]

virtual bool FixbbJobQueen::more_jobs_remain ( )

inlinevirtual

parse_job_definition_tags()

void FixbbJobQueen::parse_job_definition_tags ( utility::tag::TagCOP  , utility::vector1< protocols::jd3::standard::PreliminaryLarvalJob > const &    )

inlineoverride

parse_sfxns_and_taskops() [1/2]

void FixbbJobQueen::parse_sfxns_and_taskops ( core::pose::Pose const &  pose, utility::tag::TagCOP  tag, basic::datacache::DataMap &  datamap  ) const

inline

References enumerate_junctions::parser, beta_nonlocal::pose, and tag.

parse_sfxns_and_taskops() [2/2]

void FixbbJobQueen::parse_sfxns_and_taskops ( utility::tag::TagCOP  tag, basic::datacache::DataMap &  datamap  ) const

inline

References enumerate_junctions::parser, and tag.

Referenced by complete_larval_job_maturation().

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The documentation for this class was generated from the following files:

• src/apps/pilot/andrew/fixbb_jd3.cc
• src/apps/pilot/andrew/kellogg_ddg_jd3.cc