find_optimal_hydrophobic_thk.cc File Reference

An application for finding the minimum energy hydrophobic thickness of a membrane protein. More...

#include <devel/init.hh>
#include <protocols/membrane/AddMembraneMover.hh>
#include <core/conformation/Conformation.hh>
#include <core/conformation/membrane/MembraneInfo.hh>
#include <core/conformation/membrane/ImplicitLipidInfo.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pack/task/PackerTask.fwd.hh>
#include <protocols/minimization_packing/PackRotamersMover.hh>
#include <protocols/minimization_packing/MinMover.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/pose/Pose.hh>
#include <core/pose/PDBInfo.hh>
#include <protocols/jd2/JobDistributor.hh>
#include <utility/excn/Exceptions.hh>
#include <basic/Tracer.hh>
#include <utility/io/ozstream.hh>
#include <basic/options/keys/OptionKeys.hh>
#include <utility/string_util.hh>

Classes
class	FindOptimalHydrophobicThk

Typedefs
using	FindOptimalHydrophobicThkOP = utility::pointer::shared_ptr< FindOptimalHydrophobicThk >
using	FindOptimalHydrophobicThkCOP = utility::pointer::shared_ptr< const FindOptimalHydrophobicThk >

Functions
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("find_optimal_hydrophobic_thk")

Detailed Description

An application for finding the minimum energy hydrophobic thickness of a membrane protein.

Author

Rebecca Alford (rfalf.nosp@m.ord1.nosp@m.2@gma.nosp@m.il.c.nosp@m.om)

Typedef Documentation

FindOptimalHydrophobicThkCOP

using FindOptimalHydrophobicThkCOP = utility::pointer::shared_ptr<const FindOptimalHydrophobicThk>

FindOptimalHydrophobicThkOP

using FindOptimalHydrophobicThkOP = utility::pointer::shared_ptr<FindOptimalHydrophobicThk>

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, test.T009_Exceptions::e, FindOptimalHydrophobicThk::FindOptimalHydrophobicThk(), and basic::init().

Variable Documentation

TR

basic::Tracer TR("find_optimal_hydrophobic_thk") ( "find_optimal_hydrophobic_thk"  )

static