test.Workshop3test Namespace Reference

Variables
	extra_options
	ras = pose_from_file("../test/data/workshops/6Q21.clean.pdb")
	scorefxn = create_score_function("ref2015")
	scorefxn2 = ScoreFunction()
	r1 = ras.residue(24)
	r2 = ras.residue(20)
	a1 = r1.atom_index("N")
	a2 = r2.atom_index("O")
	hbond_set = hbonds.HBondSet()
	hset = ras.get_hbonds()
	pose = pose_from_file("../test/data/workshops/1YY9.clean.pdb")
	rsd1_num = pose.pdb_info().pdb2pose('D', 102)
	rsd2_num = pose.pdb_info().pdb2pose('A', 408)
	rsd1 = pose.residue(rsd1_num)
	rsd2 = pose.residue(rsd2_num)
	emap = EMapVector()
	pymol = PyMOLMover()

Variable Documentation

a1

test.Workshop3test.a1 = r1.atom_index("N")

a2

test.Workshop3test.a2 = r2.atom_index("O")

emap

test.Workshop3test.emap = EMapVector()

extra_options

test.Workshop3test.extra_options

hbond_set

test.Workshop3test.hbond_set = hbonds.HBondSet()

hset

test.Workshop3test.hset = ras.get_hbonds()

pose

test.Workshop3test.pose = pose_from_file("../test/data/workshops/1YY9.clean.pdb")

pymol

test.Workshop3test.pymol = PyMOLMover()

r1

test.Workshop3test.r1 = ras.residue(24)

r2

test.Workshop3test.r2 = ras.residue(20)

ras

test.Workshop3test.ras = pose_from_file("../test/data/workshops/6Q21.clean.pdb")

Referenced by apps::public1::scenarios::chemically_conjugated_docking.ubq_ras_distance().

rsd1

test.Workshop3test.rsd1 = pose.residue(rsd1_num)

rsd1_num

test.Workshop3test.rsd1_num = pose.pdb_info().pdb2pose('D', 102)

rsd2

test.Workshop3test.rsd2 = pose.residue(rsd2_num)

rsd2_num

test.Workshop3test.rsd2_num = pose.pdb_info().pdb2pose('A', 408)

scorefxn

test.Workshop3test.scorefxn = create_score_function("ref2015")

scorefxn2

test.Workshop3test.scorefxn2 = ScoreFunction()