srirupa_phosphoArg_build_rotamers.cc File Reference

#include <iostream>
#include <iomanip>
#include <devel/init.hh>
#include <core/chemical/AA.hh>
#include <core/conformation/Residue.hh>
#include <core/io/pdb/pdb_writer.hh>
#include <basic/options/util.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/pack_rotamers.hh>
#include <core/pack/packer_neighbors.hh>
#include <core/pack/rotamer_set/RotamerSet.hh>
#include <core/pack/rotamer_set/RotamerSets.hh>
#include <core/pose/Pose.hh>
#include <core/pose/PDBInfo.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/TenANeighborGraph.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/optimization/MinimizerOptions.hh>
#include <core/optimization/AtomTreeMinimizer.hh>
#include <core/scoring/func/HarmonicFunc.hh>
#include <core/scoring/constraints/CoordinateConstraint.hh>
#include <basic/options/option_macros.hh>
#include <utility/vector1.hh>
#include <utility/io/ozstream.hh>
#include <utility/string_util.hh>
#include <utility/excn/Exceptions.hh>
#include <numeric/xyzVector.hh>
#include <basic/Tracer.hh>
#include <core/import_pose/import_pose.hh>

Functions
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("apps.pilot.srirupa_phosphoArg_build_rotamers.main")

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References aa, argv, utility::vectorL< L, T, A >::at(), utility::io::oc::cerr, build_jacobian::distance, do_minimization(), test.T009_Exceptions::e, utility::options::OptionKeys::options::exit, func, basic::init(), closure_error::model, NEW_OPT, option, beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file, create_a3b_hbs::r, predPRE::resnum, oop_conformations::scorefxn, basic::options::start_file(), utility::to_string(), and TR.

Variable Documentation

TR

basic::Tracer TR("apps.pilot.srirupa_phosphoArg_build_rotamers.main") ( "apps.pilot.srirupa_phosphoArg_build_rotamers.main"  )

static

Referenced by main().