test.T100_basic Namespace Reference

Variables
	extra_options
	pose = Pose()
	pose3 = pose_from_sequence("DSEEKFLRRIGRFGYGYGPYE",'centroid')
	pose4 = pose_from_sequence("ARNDCEQGHILKMFPSTWYV", 'fa_standard')
	res5 = pose.residue(5)
	at5N = res5.atom('N')
	at5CA = res5.atom("CA")
	at5C = res5.atom("C")
	atomN = AtomID(1,5)
	atomCA = AtomID(2,5)
	atomC = AtomID(3,5)
	chm = rosetta.core.chemical.ChemicalManager.get_instance()
	rts = chm.residue_type_set('fa_standard')
	ala = rosetta.core.conformation.ResidueFactory.create_residue( rts.name_map('ALA') )

Variable Documentation

ala

test.T100_basic.ala = rosetta.core.conformation.ResidueFactory.create_residue( rts.name_map('ALA') )

at5C

test.T100_basic.at5C = res5.atom("C")

at5CA

test.T100_basic.at5CA = res5.atom("CA")

at5N

test.T100_basic.at5N = res5.atom('N')

atomC

test.T100_basic.atomC = AtomID(3,5)

atomCA

test.T100_basic.atomCA = AtomID(2,5)

atomN

test.T100_basic.atomN = AtomID(1,5)

chm

test.T100_basic.chm = rosetta.core.chemical.ChemicalManager.get_instance()

extra_options

test.T100_basic.extra_options

pose

test.T100_basic.pose = Pose()

pose3

test.T100_basic.pose3 = pose_from_sequence("DSEEKFLRRIGRFGYGYGPYE",'centroid')

pose4

test.T100_basic.pose4 = pose_from_sequence("ARNDCEQGHILKMFPSTWYV", 'fa_standard')

res5

test.T100_basic.res5 = pose.residue(5)

rts

test.T100_basic.rts = chm.residue_type_set('fa_standard')