|
Rosetta
|
Functions | |
| BooleanOptionKey const | fingerprint::add_esp ("fingerprint:add_esp") |
| BooleanOptionKey const | fingerprint::darc_shape_only ("fingerprint:darc_shape_only") |
| BooleanOptionKey const | fingerprint::darc_elsts_only ("fingerprint:darc_elsts_only") |
| RealOptionKey const | fingerprint::esp_weight ("fingerprint:esp_weight") |
| RealOptionKey const | fingerprint::esp_protein_wt ("fingerprint:esp_protein_wt") |
| RealOptionKey const | fingerprint::esp_surface_wt ("fingerprint:esp_surface_wt") |
| BooleanOptionKey const | fingerprint::delphi_grid ("fingerprint:delphi_grid") |
| RealOptionKey const | fingerprint::cap_e_potential ("fingerprint:cap_e_potential") |
| BooleanOptionKey const | fingerprint::return_zero_darc_score ("fingerprint:return_zero_darc_score") |
| BooleanOptionKey const | fingerprint::set_surface_esp_to_zero ("fingerprint:set_surface_esp_to_zero") |
| BooleanOptionKey const | fingerprint::set_protein_esp_to_zero ("fingerprint:set_protein_esp_to_zero") |
| StringOptionKey const | fingerprint::inp_lig ("fingerprint:inp_lig") |
| StringOptionKey const | fingerprint::ref_lig ("fingerprint:ref_lig") |
| BooleanOptionKey const | ProQ::ProQ ("ProQ") |
| IntegerOptionKey const | ProQ::svmmodel ("ProQ:svmmodel") |
| StringOptionKey const | ProQ::basename ("ProQ:basename") |
| BooleanOptionKey const | ProQ::membrane ("ProQ:membrane") |
| BooleanOptionKey const | ProQ::prof_bug ("ProQ:prof_bug") |
| BooleanOptionKey const | ProQ::output_feature_vector ("ProQ:output_feature_vector") |
| BooleanOptionKey const | ProQ::output_local_prediction ("ProQ:output_local_prediction") |
| StringOptionKey const | ProQ::prefix ("ProQ:prefix") |
| BooleanOptionKey const | ProQ::use_gzip ("ProQ:use_gzip") |
| RealOptionKey const | ProQ::normalize ("ProQ:normalize") |
| BooleanOptionKey const | qsar::qsar ("qsar") |
| StringOptionKey const | qsar::weights ("qsar:weights") |
| StringOptionKey const | qsar::grid_dir ("qsar:grid_dir") |
| IntegerOptionKey const | qsar::max_grid_cache_size ("qsar:max_grid_cache_size") |
| BooleanOptionKey const | rbe::rbe ("rbe") |
| StringOptionKey const | rbe::server_url ("rbe:server_url") |
| StringOptionKey const | rbe::server_port ("rbe:server_port") |
| RealOptionKey const | rbe::poll_frequency ("rbe:poll_frequency") |
| BooleanOptionKey const | RBSegmentRelax::RBSegmentRelax ("RBSegmentRelax") |
| FileOptionKey const | RBSegmentRelax::input_pdb ("RBSegmentRelax:input_pdb") |
| FileOptionKey const | RBSegmentRelax::rb_file ("RBSegmentRelax:rb_file") |
| IntegerOptionKey const | RBSegmentRelax::nrbmoves ("RBSegmentRelax:nrbmoves") |
| IntegerOptionKey const | RBSegmentRelax::nrboutercycles ("RBSegmentRelax:nrboutercycles") |
| StringOptionKey const | RBSegmentRelax::rb_scorefxn ("RBSegmentRelax:rb_scorefxn") |
| BooleanOptionKey const | RBSegmentRelax::skip_fragment_moves ("RBSegmentRelax:skip_fragment_moves") |
| BooleanOptionKey const | RBSegmentRelax::skip_seqshift_moves ("RBSegmentRelax:skip_seqshift_moves") |
| BooleanOptionKey const | RBSegmentRelax::skip_rb_moves ("RBSegmentRelax:skip_rb_moves") |
| RealVectorOptionKey const | RBSegmentRelax::helical_movement_params ("RBSegmentRelax:helical_movement_params") |
| RealVectorOptionKey const | RBSegmentRelax::strand_movement_params ("RBSegmentRelax:strand_movement_params") |
| RealVectorOptionKey const | RBSegmentRelax::default_movement_params ("RBSegmentRelax:default_movement_params") |
| IntegerOptionKey const | RBSegmentRelax::cst_seqwidth ("RBSegmentRelax:cst_seqwidth") |
| BooleanOptionKey const | hydrate::hydrate ("hydrate") |
| FileOptionKey const | hydrate::hyfile ("hydrate:hyfile") |
| BooleanOptionKey const | hydrate::hydrate_all ("hydrate:hydrate_all") |
| IntegerVectorOptionKey const | hydrate::ignore_fa_sol_at_positions ("hydrate:ignore_fa_sol_at_positions") |
| BooleanOptionKey const | hydrate::attempt_all_polar ("hydrate:attempt_all_polar") |
| RealOptionKey const | hydrate::partial_hydrate_dew ("hydrate:partial_hydrate_dew") |
| RealOptionKey const | hydrate::water_energy_threshold ("hydrate:water_energy_threshold") |
| IntegerOptionKey const | hydrate::water_rotamers_cap ("hydrate:water_rotamers_cap") |
| RealOptionKey const | hydrate::water_packing_radius ("hydrate:water_packing_radius") |
| RealOptionKey const | hydrate::water_angular_resolution ("hydrate:water_angular_resolution") |
| RealOptionKey const | hydrate::water_space_resolution ("hydrate:water_space_resolution") |
| RealOptionKey const | hydrate::hbond_threshold ("hydrate:hbond_threshold") |
| RealOptionKey const | hydrate::hbond_entropy_threshold ("hydrate:hbond_entropy_threshold") |
| RealOptionKey const | hydrate::water_desolvation ("hydrate:water_desolvation") |
| IntegerOptionKey const | hydrate::pack_nloop ("hydrate:pack_nloop") |
| BooleanOptionKey const | hydrate::pre_bump_check ("hydrate:pre_bump_check") |
| BooleanOptionKey const | hydrate::bias_design_search_to_native ("hydrate:bias_design_search_to_native") |
| BooleanOptionKey const | hydrate::show_derivatives_check ("hydrate:show_derivatives_check") |
| BooleanOptionKey const | hydrate::keep_non_buried_waters ("hydrate:keep_non_buried_waters") |
| BooleanOptionKey const | hydrate::display_water_hb_network ("hydrate:display_water_hb_network") |
| BooleanOptionKey const | hydrate::show_pre_post_filter_water_rotamers ("hydrate:show_pre_post_filter_water_rotamers") |
| BooleanOptionKey const | hydrate::show_pre_filtered_water_rotamers_count ("hydrate:show_pre_filtered_water_rotamers_count") |
| BooleanOptionKey const | hydrate::show_residues_near_water ("hydrate:show_residues_near_water") |
| BooleanOptionKey const | hydrate::only_remove_non_buried_waters ("hydrate:only_remove_non_buried_waters") |
| BooleanOptionKey const | hydrate::just_score ("hydrate:just_score") |
| BooleanOptionKey const | hydrate::show_rotamer_count ("hydrate:show_rotamer_count") |
| StringOptionKey const | hydrate::protein_flexibility ("hydrate:protein_flexibility") |
| RealOptionKey const | hydrate::near_water_threshold ("hydrate:near_water_threshold") |
| BooleanOptionKey const | hydrate::minimize_bb_where_packing ("hydrate:minimize_bb_where_packing") |
| BooleanOptionKey const | hydrate::dont_hydrate_hb_engaged_bb_O ("hydrate:dont_hydrate_hb_engaged_bb_O") |
| BooleanOptionKey const | hydrate::short_residence_time_mode ("hydrate:short_residence_time_mode") |
| FileOptionKey const | hydrate::min_backbone_file ("hydrate:min_backbone_file") |
| BooleanOptionKey const | hydrate::single_away_rotamer ("hydrate:single_away_rotamer") |
| BooleanOptionKey const | hydrate::force_enforce_all_waters ("hydrate:force_enforce_all_waters") |
| BooleanOptionKey const | rdc::rdc ("rdc") |
| BooleanOptionKey const | rdc::correct_NH_length ("rdc:correct_NH_length") |
| BooleanOptionKey const | rdc::reduced_couplings ("rdc:reduced_couplings") |
| FileOptionKey const | rdc::weights ("rdc:weights") |
| RealOptionKey const | rdc::iterate_weights ("rdc:iterate_weights") |
| FileOptionKey const | rdc::segment_file ("rdc:segment_file") |
| StringOptionKey const | rdc::segment_scoring_mode ("rdc:segment_scoring_mode") |
| RealOptionKey const | rdc::total_weight ("rdc:total_weight") |
| RealOptionKey const | rdc::tensor_weight ("rdc:tensor_weight") |
| FileOptionKey const | rdc::print_rdc_values ("rdc:print_rdc_values") |
| RealOptionKey const | rdc::iterate_tol ("rdc:iterate_tol") |
| BooleanOptionKey const | rdc::iterate_reset ("rdc:iterate_reset") |
| FileOptionKey const | rdc::dump_weight_trajectory ("rdc:dump_weight_trajectory") |
| RealVectorOptionKey const | rdc::fix_normAzz ("rdc:fix_normAzz") |
| StringOptionKey const | rdc::fit_method ("rdc:fit_method") |
| RealVectorOptionKey const | rdc::fixDa ("rdc:fixDa") |
| RealVectorOptionKey const | rdc::fixR ("rdc:fixR") |
| IntegerOptionKey const | rdc::nlsrepeat ("rdc:nlsrepeat") |
| BooleanOptionKey const | relax::relax ("relax") |
| BooleanOptionKey const | relax::fast ("relax:fast") |
| BooleanOptionKey const | relax::thorough ("relax:thorough") |
| BooleanOptionKey const | relax::centroid_mode ("relax:centroid_mode") |
| IntegerOptionKey const | relax::default_repeats ("relax:default_repeats") |
| BooleanOptionKey const | relax::dualspace ("relax:dualspace") |
| BooleanOptionKey const | relax::cyclic_peptide ("relax:cyclic_peptide") |
| BooleanOptionKey const | relax::range::range ("relax:range") |
| BooleanOptionKey const | relax::range::set_tm_helical ("relax:range:set_tm_helical") |
| RealOptionKey const | relax::range::kT ("relax:range:kT") |
| RealOptionKey const | relax::range::angle_max ("relax:range:angle_max") |
| StringOptionKey const | relax::range::nmoves ("relax:range:nmoves") |
| BooleanOptionKey const | relax::range::spherical_wave ("relax:range:spherical_wave") |
| BooleanOptionKey const | relax::range::repack_again ("relax:range:repack_again") |
| IntegerOptionKey const | relax::range::cycles ("relax:range:cycles") |
| IntegerOptionKey const | relax::range::min_cycles ("relax:range:min_cycles") |
| BooleanOptionKey const | relax::range::idealize ("relax:range:idealize") |
| BooleanOptionKey const | relax::range::skip_relax ("relax:range:skip_relax") |
| BooleanOptionKey const | relax::ramady ("relax:ramady") |
| RealOptionKey const | relax::ramady_rms_limit ("relax:ramady_rms_limit") |
| RealOptionKey const | relax::ramady_cutoff ("relax:ramady_cutoff") |
| IntegerOptionKey const | relax::ramady_max_rebuild ("relax:ramady_max_rebuild") |
| BooleanOptionKey const | relax::ramady_force ("relax:ramady_force") |
| FileOptionKey const | relax::script ("relax:script") |
| IntegerOptionKey const | relax::script_max_accept ("relax:script_max_accept") |
| BooleanOptionKey const | relax::superimpose_to_native ("relax:superimpose_to_native") |
| FileOptionKey const | relax::superimpose_to_file ("relax:superimpose_to_file") |
| BooleanOptionKey const | relax::constrain_relax_to_native_coords ("relax:constrain_relax_to_native_coords") |
| BooleanOptionKey const | relax::constrain_relax_to_start_coords ("relax:constrain_relax_to_start_coords") |
| BooleanOptionKey const | relax::coord_constrain_sidechains ("relax:coord_constrain_sidechains") |
| RealOptionKey const | relax::sc_cst_maxdist ("relax:sc_cst_maxdist") |
| BooleanOptionKey const | relax::limit_aroma_chi2 ("relax:limit_aroma_chi2") |
| BooleanOptionKey const | relax::respect_resfile ("relax:respect_resfile") |
| BooleanOptionKey const | relax::use_explicit_water ("relax:use_explicit_water") |
| BooleanOptionKey const | relax::movemap_disables_packing_of_fixed_chi_positions ("relax:movemap_disables_packing_of_fixed_chi_positions") |
| BooleanOptionKey const | relax::bb_move ("relax:bb_move") |
| BooleanOptionKey const | relax::chi_move ("relax:chi_move") |
| BooleanOptionKey const | relax::jump_move ("relax:jump_move") |
| BooleanOptionKey const | relax::dna_move ("relax:dna_move") |
| BooleanOptionKey const | relax::fix_omega ("relax:fix_omega") |
| BooleanOptionKey const | relax::minimize_bond_lengths ("relax:minimize_bond_lengths") |
| BooleanOptionKey const | relax::minimize_bond_angles ("relax:minimize_bond_angles") |
| IntegerOptionKey const | relax::minimize_bondlength_subset ("relax:minimize_bondlength_subset") |
| IntegerOptionKey const | relax::minimize_bondangle_subset ("relax:minimize_bondangle_subset") |
| StringOptionKey const | relax::min_type ("relax:min_type") |
| BooleanOptionKey const | relax::cartesian ("relax:cartesian") |
| RealOptionKey const | relax::chainbreak_weight ("relax:chainbreak_weight") |
| RealOptionKey const | relax::linear_chainbreak_weight ("relax:linear_chainbreak_weight") |
| RealOptionKey const | relax::overlap_chainbreak_weight ("relax:overlap_chainbreak_weight") |
| BooleanOptionKey const | relax::classic ("relax:classic") |
| FileOptionKey const | relax::sequence_file ("relax:sequence_file") |
| BooleanOptionKey const | relax::quick ("relax:quick") |
| BooleanOptionKey const | relax::sequence ("relax:sequence") |
| IntegerOptionKey const | relax::minirelax_repeats ("relax:minirelax_repeats") |
| RealOptionKey const | relax::minirelax_sdev ("relax:minirelax_sdev") |
| BooleanOptionKey const | relax::wobblemoves ("relax:wobblemoves") |
| FileOptionKey const | relax::constrain_relax_segments ("relax:constrain_relax_segments") |
| RealOptionKey const | relax::coord_cst_width ("relax:coord_cst_width") |
| RealOptionKey const | relax::coord_cst_stdev ("relax:coord_cst_stdev") |
| BooleanOptionKey const | relax::ramp_constraints ("relax:ramp_constraints") |
| RealOptionKey const | relax::energycut ("relax:energycut") |
| BooleanOptionKey const | relax::mini ("relax:mini") |
| IntegerOptionKey const | relax::stage1_ramp_cycles ("relax:stage1_ramp_cycles") |
| IntegerOptionKey const | relax::stage1_ramp_inner_cycles ("relax:stage1_ramp_inner_cycles") |
| IntegerOptionKey const | relax::stage2_repack_period ("relax:stage2_repack_period") |
| IntegerOptionKey const | relax::stage2_cycles ("relax:stage2_cycles") |
| RealOptionKey const | relax::min_tolerance ("relax:min_tolerance") |
| IntegerOptionKey const | relax::stage3_cycles ("relax:stage3_cycles") |
| RealOptionKey const | relax::cycle_ratio ("relax:cycle_ratio") |
| RealOptionKey const | relax::filter_stage2_beginning ("relax:filter_stage2_beginning") |
| RealOptionKey const | relax::filter_stage2_quarter ("relax:filter_stage2_quarter") |
| RealOptionKey const | relax::filter_stage2_half ("relax:filter_stage2_half") |
| RealOptionKey const | relax::filter_stage2_end ("relax:filter_stage2_end") |
| BooleanOptionKey const | relax::centroid::centroid ("relax:centroid") |
| StringOptionKey const | relax::centroid::weights ("relax:centroid:weights") |
| BooleanOptionKey const | relax::centroid::ramp_vdw ("relax:centroid:ramp_vdw") |
| BooleanOptionKey const | relax::centroid::ramp_rama ("relax:centroid:ramp_rama") |
| StringOptionKey const | relax::centroid::parameters ("relax:centroid:parameters") |
| BooleanOptionKey const | relax::centroid::do_final_repack ("relax:centroid:do_final_repack") |
| BooleanOptionKey const | relax::centroid::increase_vdw_radii ("relax:centroid:increase_vdw_radii") |
| BooleanOptionKey const | remodel::remodel ("remodel") |
| FileOptionKey const | remodel::blueprint ("remodel:blueprint") |
| FileOptionKey const | remodel::cstfile ("remodel:cstfile") |
| BooleanOptionKey const | remodel::cst_fa_only ("remodel:cst_fa_only") |
| IntegerOptionKey const | remodel::cstfilter ("remodel:cstfilter") |
| StringOptionKey const | remodel::cen_sfxn ("remodel:cen_sfxn") |
| BooleanOptionKey const | remodel::check_scored_centroid ("remodel:check_scored_centroid") |
| IntegerOptionKey const | remodel::num_trajectory ("remodel:num_trajectory") |
| IntegerOptionKey const | remodel::save_top ("remodel:save_top") |
| BooleanOptionKey const | remodel::swap_refine_confirm_protocols ("remodel:swap_refine_confirm_protocols") |
| BooleanOptionKey const | remodel::bypass_fragments ("remodel:bypass_fragments") |
| BooleanOptionKey const | remodel::use_same_length_fragments ("remodel:use_same_length_fragments") |
| BooleanOptionKey const | remodel::no_jumps ("remodel:no_jumps") |
| IntegerOptionKey const | remodel::reroot_tree ("remodel:reroot_tree") |
| BooleanOptionKey const | remodel::use_blueprint_sequence ("remodel:use_blueprint_sequence ") |
| BooleanOptionKey const | remodel::quick_and_dirty ("remodel:quick_and_dirty ") |
| BooleanOptionKey const | remodel::checkpoint ("remodel:checkpoint ") |
| BooleanOptionKey const | remodel::use_pose_relax ("remodel:use_pose_relax ") |
| BooleanOptionKey const | remodel::use_cart_relax ("remodel:use_cart_relax ") |
| BooleanOptionKey const | remodel::free_relax ("remodel:free_relax ") |
| StringOptionKey const | remodel::generic_aa ("remodel:generic_aa") |
| RealOptionKey const | remodel::cluster_radius ("remodel:cluster_radius") |
| BooleanOptionKey const | remodel::use_clusters ("remodel:use_clusters") |
| BooleanOptionKey const | remodel::run_confirmation ("remodel:run_confirmation") |
| BooleanOptionKey const | remodel::cluster_on_entire_pose ("remodel:cluster_on_entire_pose") |
| IntegerOptionKey const | remodel::dr_cycles ("remodel:dr_cycles") |
| IntegerOptionKey const | remodel::two_chain_tree ("remodel:two_chain_tree") |
| IntegerOptionKey const | remodel::repeat_structure ("remodel:repeat_structure") |
| IntegerOptionKey const | remodel::lh_ex_limit ("remodel:lh_ex_limit") |
| StringVectorOptionKey const | remodel::lh_filter_string ("remodel:lh_filter_string") |
| IntegerOptionKey const | remodel::lh_cbreak_selection ("remodel:lh_cbreak_selection") |
| BooleanOptionKey const | remodel::lh_closure_filter ("remodel:lh_closure_filter") |
| BooleanOptionKey const | remodel::cen_minimize ("remodel:cen_minimize") |
| IntegerOptionKey const | remodel::core_cutoff ("remodel:core_cutoff") |
| IntegerOptionKey const | remodel::boundary_cutoff ("remodel:boundary_cutoff") |
| StringOptionKey const | remodel::coreAA ("remodel:coreAA") |
| StringOptionKey const | remodel::boundaryAA ("remodel:boundaryAA") |
| StringOptionKey const | remodel::surfaceAA ("remodel:surfaceAA") |
| BooleanOptionKey const | remodel::design_around_ligand ("remodel:design_around_ligand") |
| BooleanOptionKey const | remodel::move_ligand ("remodel:move_ligand") |
| BooleanOptionKey const | remodel::resclass_by_sasa ("remodel:resclass_by_sasa") |
| RealOptionKey const | remodel::helical_rise ("remodel:helical_rise") |
| RealOptionKey const | remodel::helical_radius ("remodel:helical_radius") |
| RealOptionKey const | remodel::helical_omega ("remodel:helical_omega") |
| RealVectorOptionKey const | remodel::filter_rise ("remodel:filter_rise") |
| RealVectorOptionKey const | remodel::filter_radius ("remodel:filter_radius") |
| RealVectorOptionKey const | remodel::filter_omega ("remodel:filter_omega") |
| RealOptionKey const | remodel::COM_sd ("remodel:COM_sd") |
| RealOptionKey const | remodel::COM_tolerance ("remodel:COM_tolerance") |
| RealOptionKey const | remodel::vdw ("remodel:vdw") |
| RealOptionKey const | remodel::rama ("remodel:rama") |
| RealOptionKey const | remodel::cbeta ("remodel:cbeta") |
| RealOptionKey const | remodel::cenpack ("remodel:cenpack") |
| RealOptionKey const | remodel::rg_local ("remodel:rg_local") |
| RealOptionKey const | remodel::hb_lrbb ("remodel:hb_lrbb") |
| RealOptionKey const | remodel::hb_srbb ("remodel:hb_srbb") |
| RealOptionKey const | remodel::rg ("remodel:rg") |
| RealOptionKey const | remodel::rsigma ("remodel:rsigma") |
| RealOptionKey const | remodel::ss_pair ("remodel:ss_pair") |
| BooleanOptionKey const | remodel::build_disulf ("remodel:build_disulf") |
| RealOptionKey const | remodel::match_rt_limit ("remodel:match_rt_limit") |
| IntegerVectorOptionKey const | remodel::disulf_landing_range ("remodel:disulf_landing_range") |
| BooleanOptionKey const | remodel::rank_by_bsasa ("remodel:rank_by_bsasa") |
| BooleanOptionKey const | remodel::staged_sampling::staged_sampling ("remodel:staged_sampling") |
| StringOptionKey const | remodel::staged_sampling::loop_9mer_score_file ("remodel:staged_sampling:loop_9mer_score_file") |
| StringOptionKey const | remodel::staged_sampling::loop_3mer_score_file ("remodel:staged_sampling:loop_3mer_score_file") |
| StringOptionKey const | remodel::staged_sampling::all_9mer_score_file ("remodel:staged_sampling:all_9mer_score_file") |
| StringOptionKey const | remodel::staged_sampling::all_3mer_score_file ("remodel:staged_sampling:all_3mer_score_file") |
| IntegerOptionKey const | remodel::staged_sampling::loop_9mer_cycles ("remodel:staged_sampling:loop_9mer_cycles") |
| IntegerOptionKey const | remodel::staged_sampling::loop_3mer_cycles ("remodel:staged_sampling:loop_3mer_cycles") |
| IntegerOptionKey const | remodel::staged_sampling::all_9mer_cycles ("remodel:staged_sampling:all_9mer_cycles") |
| IntegerOptionKey const | remodel::staged_sampling::all_3mer_cycles ("remodel:staged_sampling:all_3mer_cycles") |
| BooleanOptionKey const | remodel::staged_sampling::fa_mode ("remodel:staged_sampling:fa_mode") |
| BooleanOptionKey const | remodel::staged_sampling::fa_relax_moves ("remodel:staged_sampling:fa_relax_moves") |
| BooleanOptionKey const | remodel::staged_sampling::loop_btw_parametric_components ("remodel:staged_sampling:loop_btw_parametric_components") |
| BooleanOptionKey const | remodel::staged_sampling::pre_centroid ("remodel:staged_sampling:pre_centroid") |
| BooleanOptionKey const | remodel::staged_sampling::sample_over_loops ("remodel:staged_sampling:sample_over_loops") |
| BooleanOptionKey const | remodel::staged_sampling::small_moves ("remodel:staged_sampling:small_moves") |
| StringOptionKey const | remodel::staged_sampling::starting_sequence ("remodel:staged_sampling:starting_sequence") |
| FileOptionKey const | remodel::staged_sampling::starting_pdb ("remodel:staged_sampling:starting_pdb") |
| StringOptionKey const | remodel::staged_sampling::starting_non_canonical ("remodel:staged_sampling:starting_non_canonical") |
| BooleanOptionKey const | remodel::staged_sampling::start_w_ideal_helices ("remodel:staged_sampling:start_w_ideal_helices") |
| BooleanOptionKey const | remodel::staged_sampling::sym_move ("remodel:staged_sampling:sym_move") |
| FileOptionKey const | remodel::staged_sampling::residues_to_sample ("remodel:staged_sampling:residues_to_sample") |
| BooleanOptionKey const | remodel::staged_sampling::require_frags_match_blueprint ("remodel:staged_sampling:require_frags_match_blueprint") |
| BooleanOptionKey const | remodel::domainFusion::domainFusion ("remodel:domainFusion") |
| FileOptionKey const | remodel::domainFusion::insert_segment_from_pdb ("remodel:domainFusion:insert_segment_from_pdb") |
| FileOptionKey const | remodel::domainFusion::insert_segment2_from_pdb ("remodel:domainFusion:insert_segment2_from_pdb") |
| BooleanOptionKey const | remodel::design::design ("remodel:design") |
| BooleanOptionKey const | remodel::design::no_design ("remodel:design:no_design ") |
| BooleanOptionKey const | remodel::design::design_all ("remodel:design:design_all") |
| BooleanOptionKey const | remodel::design::allow_rare_aro_chi ("remodel:design:allow_rare_aro_chi") |
| BooleanOptionKey const | remodel::design::skip_partial ("remodel:design:skip_partial") |
| BooleanOptionKey const | remodel::design::design_neighbors ("remodel:design:design_neighbors") |
| BooleanOptionKey const | remodel::design::find_neighbors ("remodel:design:find_neighbors") |
| BooleanOptionKey const | remodel::design::include_current ("remodel:design:include_current") |
| BooleanOptionKey const | remodel::RemodelLoopMover::RemodelLoopMover ("remodel:RemodelLoopMover") |
| RealOptionKey const | remodel::RemodelLoopMover::max_linear_chainbreak ("remodel:RemodelLoopMover:max_linear_chainbreak") |
| BooleanOptionKey const | remodel::RemodelLoopMover::randomize_loops ("remodel:RemodelLoopMover:randomize_loops") |
| BooleanOptionKey const | remodel::RemodelLoopMover::use_loop_hash ("remodel:RemodelLoopMover:use_loop_hash") |
| FileOptionKey const | remodel::RemodelLoopMover::set_segment ("remodel:RemodelLoopMover:set_segment") |
| IntegerOptionKey const | remodel::RemodelLoopMover::allowed_closure_attempts ("remodel:RemodelLoopMover:allowed_closure_attempts") |
| IntegerOptionKey const | remodel::RemodelLoopMover::loophash_cycles ("remodel:RemodelLoopMover:loophash_cycles") |
| IntegerOptionKey const | remodel::RemodelLoopMover::simultaneous_cycles ("remodel:RemodelLoopMover:simultaneous_cycles") |
| IntegerOptionKey const | remodel::RemodelLoopMover::independent_cycles ("remodel:RemodelLoopMover:independent_cycles") |
| IntegerOptionKey const | remodel::RemodelLoopMover::boost_closure_cycles ("remodel:RemodelLoopMover:boost_closure_cycles") |
| RealOptionKey const | remodel::RemodelLoopMover::threshold_for_boost_closure ("remodel:RemodelLoopMover:threshold_for_boost_closure") |
| IntegerOptionKey const | remodel::RemodelLoopMover::force_cutting_index ("remodel:RemodelLoopMover:force_cutting_index") |
| BooleanOptionKey const | remodel::RemodelLoopMover::force_cutting_N ("remodel:RemodelLoopMover:force_cutting_N") |
| BooleanOptionKey const | remodel::RemodelLoopMover::bypass_closure ("remodel:RemodelLoopMover:bypass_closure") |
| BooleanOptionKey const | remodel::RemodelLoopMover::cyclic_peptide ("remodel:RemodelLoopMover:cyclic_peptide") |
| RealOptionKey const | remodel::RemodelLoopMover::temperature ("remodel:RemodelLoopMover:temperature") |
| BooleanOptionKey const | resample::resample ("resample") |
| FileOptionKey const | resample::silent ("resample:silent") |
| StringOptionKey const | resample::tag ("resample:tag") |
| BooleanOptionKey const | resample::stage1 ("resample:stage1") |
| BooleanOptionKey const | resample::stage2 ("resample:stage2") |
1.9.1