remodel::RemodelLoopMover Namespace Reference

Functions
BooleanOptionKey const	RemodelLoopMover ("remodel:RemodelLoopMover")
RealOptionKey const	max_linear_chainbreak ("remodel:RemodelLoopMover:max_linear_chainbreak")
BooleanOptionKey const	randomize_loops ("remodel:RemodelLoopMover:randomize_loops")
BooleanOptionKey const	use_loop_hash ("remodel:RemodelLoopMover:use_loop_hash")
FileOptionKey const	set_segment ("remodel:RemodelLoopMover:set_segment")
IntegerOptionKey const	allowed_closure_attempts ("remodel:RemodelLoopMover:allowed_closure_attempts")
IntegerOptionKey const	loophash_cycles ("remodel:RemodelLoopMover:loophash_cycles")
IntegerOptionKey const	simultaneous_cycles ("remodel:RemodelLoopMover:simultaneous_cycles")
IntegerOptionKey const	independent_cycles ("remodel:RemodelLoopMover:independent_cycles")
IntegerOptionKey const	boost_closure_cycles ("remodel:RemodelLoopMover:boost_closure_cycles")
RealOptionKey const	threshold_for_boost_closure ("remodel:RemodelLoopMover:threshold_for_boost_closure")
IntegerOptionKey const	force_cutting_index ("remodel:RemodelLoopMover:force_cutting_index")
BooleanOptionKey const	force_cutting_N ("remodel:RemodelLoopMover:force_cutting_N")
BooleanOptionKey const	bypass_closure ("remodel:RemodelLoopMover:bypass_closure")
BooleanOptionKey const	cyclic_peptide ("remodel:RemodelLoopMover:cyclic_peptide")
RealOptionKey const	temperature ("remodel:RemodelLoopMover:temperature")

Function Documentation

allowed_closure_attempts()

IntegerOptionKey const remodel::RemodelLoopMover::allowed_closure_attempts

(

"remodel:RemodelLoopMover:allowed_closure_attempts"

)

References RemodelLoopMover().

boost_closure_cycles()

IntegerOptionKey const remodel::RemodelLoopMover::boost_closure_cycles

(

"remodel:RemodelLoopMover:boost_closure_cycles"

)

References RemodelLoopMover().

bypass_closure()

BooleanOptionKey const remodel::RemodelLoopMover::bypass_closure

(

"remodel:RemodelLoopMover:bypass_closure"

)

References RemodelLoopMover().

cyclic_peptide()

BooleanOptionKey const remodel::RemodelLoopMover::cyclic_peptide

(

"remodel:RemodelLoopMover:cyclic_peptide"

)

References RemodelLoopMover().

force_cutting_index()

IntegerOptionKey const remodel::RemodelLoopMover::force_cutting_index

(

"remodel:RemodelLoopMover:force_cutting_index"

)

References RemodelLoopMover().

force_cutting_N()

BooleanOptionKey const remodel::RemodelLoopMover::force_cutting_N

(

"remodel:RemodelLoopMover:force_cutting_N"

)

References RemodelLoopMover().

independent_cycles()

IntegerOptionKey const remodel::RemodelLoopMover::independent_cycles

(

"remodel:RemodelLoopMover:independent_cycles"

)

References RemodelLoopMover().

loophash_cycles()

IntegerOptionKey const remodel::RemodelLoopMover::loophash_cycles

(

"remodel:RemodelLoopMover:loophash_cycles"

)

References RemodelLoopMover().

max_linear_chainbreak()

RealOptionKey const remodel::RemodelLoopMover::max_linear_chainbreak

(

"remodel:RemodelLoopMover:max_linear_chainbreak"

)

References RemodelLoopMover().

randomize_loops()

BooleanOptionKey const remodel::RemodelLoopMover::randomize_loops

(

"remodel:RemodelLoopMover:randomize_loops"

)

References RemodelLoopMover().

RemodelLoopMover()

BooleanOptionKey const remodel::RemodelLoopMover::RemodelLoopMover

(

"remodel:RemodelLoopMover"

)

Referenced by allowed_closure_attempts(), boost_closure_cycles(), bypass_closure(), cyclic_peptide(), force_cutting_index(), force_cutting_N(), independent_cycles(), loophash_cycles(), max_linear_chainbreak(), randomize_loops(), set_segment(), simultaneous_cycles(), temperature(), threshold_for_boost_closure(), and use_loop_hash().

set_segment()

FileOptionKey const remodel::RemodelLoopMover::set_segment

(

"remodel:RemodelLoopMover:set_segment"

)

References RemodelLoopMover().

simultaneous_cycles()

IntegerOptionKey const remodel::RemodelLoopMover::simultaneous_cycles

(

"remodel:RemodelLoopMover:simultaneous_cycles"

)

References RemodelLoopMover().

temperature()

RealOptionKey const remodel::RemodelLoopMover::temperature

(

"remodel:RemodelLoopMover:temperature"

)

References RemodelLoopMover().

threshold_for_boost_closure()

RealOptionKey const remodel::RemodelLoopMover::threshold_for_boost_closure

(

"remodel:RemodelLoopMover:threshold_for_boost_closure"

)

References RemodelLoopMover().

use_loop_hash()

BooleanOptionKey const remodel::RemodelLoopMover::use_loop_hash

(

"remodel:RemodelLoopMover:use_loop_hash"

)

References RemodelLoopMover().