demo.D010_Pose_structure Namespace Reference

Functions
def	pose_structure (pose, display_residues=[])

Variables
	extra_options
	parser = optparse.OptionParser()
	INTERPRETING RESULTS. More...
	dest
	default
	help
	options
	args
	pdb_filename = options.pdb_filename
	pose = Pose()
	residues = options.residues

Function Documentation

pose_structure()

def demo.D010_Pose_structure.pose_structure	(		pose,
			display_residues = []
	)

Extracts and displays various structural properties of the input  <pose>
    and its  <display_residues>  including:
        -PDB numbering
        -chain identification
        -sequence
        -secondary structure

References ObjexxFCL.len(), print(), basic::options::OptionKeys::run::PyMOLMover.PyMOLMover, range, str(), and ObjexxFCL.strip().

Variable Documentation

args

demo.D010_Pose_structure.args

default

demo.D010_Pose_structure.default

dest

demo.D010_Pose_structure.dest

extra_options

demo.D010_Pose_structure.extra_options

help

demo.D010_Pose_structure.help

options

demo.D010_Pose_structure.options

parser

demo.D010_Pose_structure.parser = optparse.OptionParser()

INTERPRETING RESULTS.

COMMANDLINE COMPATIBILITY

pdb_filename

demo.D010_Pose_structure.pdb_filename = options.pdb_filename

Referenced by create_and_score_fragments(), dump_hbonds(), get_tag_from_pdb_filename(), main(), MainWindow.on_importPDB_button_clicked(), MainWindow.on_pushButton_clicked(), run_pep_prep(), RunPepSpec(), score_folded_residues(), and simple_relax().

pose

demo.D010_Pose_structure.pose = Pose()

residues

list demo.D010_Pose_structure.residues = options.residues