protocols::jumping::SpecificJumpSetup Class Reference

#include <SpecificJumpSetup.hh>

Inheritance diagram for protocols::jumping::SpecificJumpSetup:

Public Member Functions
	SpecificJumpSetup (Size, core::conformation::SecondaryStructureOP, core::pose::PoseOP, int, int, int, int)
	SpecificJumpSetup (Size, core::conformation::SecondaryStructureOP, core::pose::PoseOP, int, int *, int *, int *, int *)
std::string	type_name () const
virtual JumpSample	create_jump_sample () const
virtual JumpSample	clean_jump_sample (JumpSample) const
virtual core::fragment::FragSetOP	generate_jump_frags (JumpSample const &, core::kinematics::MoveMap const &mm) const
	returns an ordered FragSet that is compatible with the JumpSample default: generate jumps from ss-library according to JumpSample More...

Private Attributes
Size	nres_
int	nJumps_
core::conformation::SecondaryStructureOP	ss_def_
core::pose::PoseOP	native_pose_
int *	iResid_
int *	jResid_
int *	orientation_
int *	pleating_

Constructor & Destructor Documentation

SpecificJumpSetup() [1/2]

protocols::jumping::SpecificJumpSetup::SpecificJumpSetup	(	Size	,
		core::conformation::SecondaryStructureOP	,
		core::pose::PoseOP	,
		int	,
		int	,
		int	,
		int
	)

SpecificJumpSetup() [2/2]

protocols::jumping::SpecificJumpSetup::SpecificJumpSetup	(	Size	,
		core::conformation::SecondaryStructureOP	,
		core::pose::PoseOP	,
		int	,
		int *	,
		int *	,
		int *	,
		int *
	)

Member Function Documentation

clean_jump_sample()

virtual JumpSample protocols::jumping::SpecificJumpSetup::clean_jump_sample ( JumpSample  ) const

inlinevirtual

References utility::io::oc::cerr.

create_jump_sample()

JumpSample protocols::jumping::SpecificJumpSetup::create_jump_sample ( ) const

virtual

References create_a3b_hbs::i, and docking::jumps.

generate_jump_frags()

FragSetOP protocols::jumping::SpecificJumpSetup::generate_jump_frags ( JumpSample const &  , core::kinematics::MoveMap const &  mm  ) const

virtual

returns an ordered FragSet that is compatible with the JumpSample default: generate jumps from ss-library according to JumpSample

References basic::options::OptionKeys::frags::frags, and create_a3b_hbs::i.

type_name()

std::string protocols::jumping::SpecificJumpSetup::type_name ( ) const

inline

Member Data Documentation

iResid_

int* protocols::jumping::SpecificJumpSetup::iResid_

private

jResid_

int* protocols::jumping::SpecificJumpSetup::jResid_

private

native_pose_

core::pose::PoseOP protocols::jumping::SpecificJumpSetup::native_pose_

private

nJumps_

int protocols::jumping::SpecificJumpSetup::nJumps_

private

nres_

Size protocols::jumping::SpecificJumpSetup::nres_

private

orientation_

int* protocols::jumping::SpecificJumpSetup::orientation_

private

pleating_

int* protocols::jumping::SpecificJumpSetup::pleating_

private

ss_def_

core::conformation::SecondaryStructureOP protocols::jumping::SpecificJumpSetup::ss_def_

private

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The documentation for this class was generated from the following files:

• src/apps/pilot/dgront/SpecificJumpSetup.hh
• src/apps/pilot/dgront/SpecificJumpSetup.cc