SequenceProfileDB Class Reference

Inheritance diagram for SequenceProfileDB:

Public Member Functions
	SequenceProfileDB (utility::file::FileName const &fn)
	~SequenceProfileDB ()
SequenceProfileOP	get_next_profile ()
bool	has_another_profile ()
Public Member Functions inherited from utility::VirtualBase
	VirtualBase ()=default
	Default constructor. More...
virtual	~VirtualBase ()=default
	The virtual destructor is one of the main reasons for the VirtualBase class. More...
	VirtualBase (VirtualBase const &)=default
	VirtualBase (VirtualBase &&)=default
VirtualBase &	operator= (VirtualBase const &)=default
VirtualBase &	operator= (VirtualBase &&)=default

Private Member Functions
void	open_file (FileName const &fn)
void	init_private_data_ ()

Private Attributes
bool	has_another_prof_
utility::vector1< core::chemical::AA >	order_
utility::io::izstream	input_

Constructor & Destructor Documentation

SequenceProfileDB()

SequenceProfileDB::SequenceProfileDB ( utility::file::FileName const &  fn )

inline

References kmeans_adaptive_kernel_density_bb_dependent_rotlib::fn.

~SequenceProfileDB()

SequenceProfileDB::~SequenceProfileDB ( )

inline

Member Function Documentation

get_next_profile()

SequenceProfileOP SequenceProfileDB::get_next_profile ( )

inline

References ObjexxFCL::float_of(), getline(), kmeans_adaptive_kernel_density_bb_dependent_rotlib::idx, line, basic::options::OptionKeys::relax::sequence, tag, and utility_exit_with_message.

Referenced by main().

has_another_profile()

bool SequenceProfileDB::has_another_profile ( )

inline

Referenced by main().

init_private_data_()

void SequenceProfileDB::init_private_data_ ( )

inlineprivate

References create_a3b_hbs::i.

open_file()

void SequenceProfileDB::open_file ( FileName const &  fn )

inlineprivate

References kmeans_adaptive_kernel_density_bb_dependent_rotlib::fn, and utility_exit_with_message.

Member Data Documentation

has_another_prof_

bool SequenceProfileDB::has_another_prof_

private

input_

utility::io::izstream SequenceProfileDB::input_

private

order_

utility::vector1< core::chemical::AA > SequenceProfileDB::order_

private

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The documentation for this class was generated from the following file:

• src/apps/pilot/james/prof_search.cc