pcs_fragments_to_distances2.cc File Reference

#include <core/types.hh>
#include <devel/init.hh>
#include <core/chemical/AA.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/chemical/ResidueTypeSet.fwd.hh>
#include <core/scoring/rms_util.hh>
#include <core/scoring/dssp/Dssp.hh>
#include <core/pose/Pose.hh>
#include <core/io/silent/silent.fwd.hh>
#include <core/io/silent/ProteinSilentStruct.hh>
#include <core/io/silent/SilentFileData.hh>
#include <core/kinematics/RT.hh>
#include <core/io/pdb/pdb_writer.hh>
#include <core/import_pose/import_pose.hh>
#include <numeric/constants.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/robert.OptionKeys.gen.hh>
#include <core/conformation/Conformation.fwd.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/Atom.hh>
#include <utility/vector1.hh>
#include <utility/io/izstream.hh>
#include <utility/io/ozstream.hh>
#include <utility/file/FileName.hh>
#include <ObjexxFCL/char.functions.hh>
#include <ObjexxFCL/string.functions.hh>
#include <ObjexxFCL/FArray2A.hh>
#include <ObjexxFCL/FArray2A.fwd.hh>
#include <numeric/random/random.hh>
#include <numeric/xyzMatrix.hh>
#include <numeric/xyzMatrix.fwd.hh>
#include <core/sequence/util.hh>
#include <fstream>
#include <iostream>
#include <string>
#include <protocols/jumping/StrandPairing.hh>
#include <numeric/xyz.functions.hh>
#include <ObjexxFCL/format.hh>

Functions
utility::vector1< pose::Pose >	largest_cluster (utility::vector1< pose::Pose > lowscore_poses, utility::vector1< pose::Pose > pose_list)
int	main (int argc, char *argv[])

Function Documentation

largest_cluster()

utility::vector1< pose::Pose > largest_cluster	(	utility::vector1< pose::Pose >	lowscore_poses,
		utility::vector1< pose::Pose >	pose_list
	)

References create_a3b_hbs::ii, beta_nonlocal::jj, numeric::model_quality::maxsub(), basic::options::option, robert::pcs_maxsub_filter(), and robert::pcs_maxsub_rmsd().

Referenced by main().

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, basic::options::OptionKeys::chemical::chemical, utility::io::oc::cout, build_jacobian::distance, test.T009_Exceptions::e, end, basic::options::OptionKeys::in::file::fasta, kmeans_adaptive_kernel_density_bb_dependent_rotlib::fn, utility::io::izstream::good(), create_a3b_hbs::ii, basic::init(), subloop_histogram::iterator, beta_nonlocal::jj, largest_cluster(), DRRAFTER_util::matches(), basic::options::OptionKeys::in::file::native, in::file::native(), surface_app::native, basic::options::option, option, robert::pairdata_input_pdb_list(), robert::pcs_cluster_coverage(), robert::pcs_cluster_lowscoring(), basic::options::OptionKeys::robert::pcs_dump_cluster, robert::pcs_maxsub_rmsd(), beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file(), erraser_analysis::res1, erraser_analysis::res2, ObjexxFCL::right_string_of(), runtime_assert, basic::options::OptionKeys::relax::sequence, sfd, and basic::options::OptionKeys::inout::dbms::user.