PDB_IOBenchmark Class Reference

#include <pdb_io.bench.hh>

Inheritance diagram for PDB_IOBenchmark:

Public Member Functions
	PDB_IOBenchmark (std::string name)
void	setUp () override
void	run (core::Real scaleFactor) override
void	tearDown () override
Public Member Functions inherited from PerformanceBenchmark
	PerformanceBenchmark (std::string name)
virtual	~PerformanceBenchmark ()
double	execute (core::Real scaleFactor)
std::string	name ()

Public Attributes
core::pose::Pose	pose
std::string	pdb_string_

Additional Inherited Members
Static Public Member Functions inherited from PerformanceBenchmark
static void	executeOneBenchmark (std::string const &name, core::Real scaleFactor=1)
static void	executeAllBenchmarks (core::Real scaleFactor=1)
static std::string	getReport ()
static std::string	getOneReport (std::string const &name)

Constructor & Destructor Documentation

PDB_IOBenchmark()

PDB_IOBenchmark::PDB_IOBenchmark ( std::string  name )

inline

Member Function Documentation

run()

void PDB_IOBenchmark::run ( core::Real  scaleFactor )

inlineoverridevirtual

Reimplemented from PerformanceBenchmark.

References create_a3b_hbs::i, pdb_string_, pose, and pyrosetta.distributed.io::pose_from_pdbstring().

setUp()

void PDB_IOBenchmark::setUp ( )

inlineoverridevirtual

Reimplemented from PerformanceBenchmark.

References end, oop_conformations::length, kic_runner::pdb, and pdb_string_.

tearDown()

void PDB_IOBenchmark::tearDown ( )

inlineoverridevirtual

Reimplemented from PerformanceBenchmark.

Member Data Documentation

pdb_string_

std::string PDB_IOBenchmark::pdb_string_

Referenced by run(), and setUp().

pose

core::pose::Pose PDB_IOBenchmark::pose

Referenced by pyrosetta.bindings.pose.PoseScoreAccessor::__delitem__(), pyrosetta.bindings.scores.core.PoseCacheAccessor::__delitem__(), pyrosetta.bindings.scores.extra_scores.ExtraScoresAccessorBase::__delitem__(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessorBase::__delitem__(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricStringDataAccessor::__delitem__(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricRealDataAccessor::__delitem__(), pyrosetta.bindings.pose.PoseResidueAccessor::__getitem__(), pyrosetta.bindings.pose.PoseResidueLabelAccessor::__getitem__(), pyrosetta.bindings.pose.PoseResidueAccessor::__iadd__(), pyrosetta.bindings.pose.PoseResidueAccessor::__imul__(), pyrosetta.bindings.pose.PoseResidueAccessor::__iter__(), pyrosetta.bindings.pose.PoseResidueAccessor::__len__(), pyrosetta.bindings.pose.PoseResidueLabelAccessor::__len__(), pyrosetta.bindings.pose.PoseResidueLabelAccessor::__repr__(), pyrosetta.bindings.pose.PoseResidueAccessor::__reversed__(), pyrosetta.bindings.pose.PoseScoreAccessor::__setitem__(), pyrosetta.bindings.scores.extra_scores.ExtraScoresAccessorBase::__setitem__(), pyrosetta.bindings.scores.base.PoseCacheAccessorBase::_get_sm_data_dict(), pyrosetta.bindings.scores.base.PoseCacheAccessorBase::_has_reserved_custom_metric_keys(), pyrosetta.bindings.scores.base.PoseCacheAccessorBase::_maybe_delete_keys_from_sm_data(), pyrosetta.bindings.scores.base.PoseCacheAccessorBase::_maybe_delete_reserved_keys_from_sm_data(), pyrosetta.bindings.pose.PoseScoreAccessor::all(), pyrosetta.bindings.scores.energies.EnergiesAccessor::all(), pyrosetta.bindings.scores.extra_scores.ExtraFloatScoresDataAccessor::all(), pyrosetta.bindings.scores.extra_scores.ExtraStringScoresDataAccessor::all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricStringDataAccessor::all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricRealDataAccessor::all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricCompositeStringDataAccessor::all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricCompositeRealDataAccessor::all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricPerResidueStringDataAccessor::all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricPerResidueRealDataAccessor::all(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricPerResidueProbabilitiesDataAccessor::all(), pyrosetta.bindings.scores.base.PoseCacheAccessorBase::apply(), pyrosetta.bindings.pose.PoseScoreAccessor::clear(), pyrosetta.bindings.scores.core.PoseCacheAccessor::clear(), pyrosetta.bindings.scores.energies.EnergiesAccessor::clear(), pyrosetta.bindings.scores.extra_scores.ExtraScoresAccessorBase::clear(), pyrosetta.bindings.scores.extra_scores.ExtraScoresAccessor::clear(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor::clear(), pyrosetta.distributed.packed_pose.core.PackedPose::clone(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor::composite_real(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor::composite_string(), pyrosetta.distributed.packed_pose.core.PackedPose::empty(), pyrosetta.bindings.pose.PoseScoreAccessor::energies(), pyrosetta.bindings.scores.core.PoseCacheAccessor::energies(), pyrosetta.bindings.pose.PoseScoreAccessor::extra(), pyrosetta.bindings.scores.core.PoseCacheAccessor::extra(), pyrosetta.bindings.scores.core.PoseCacheAccessor::metrics(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor::per_residue_probabilities(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor::per_residue_real(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor::per_residue_string(), pyrosetta.bindings.scores.extra_scores.ExtraScoresAccessor::real(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor::real(), run(), pyrosetta.bindings.scores.extra_scores.ExtraScoresAccessor::string(), pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessor::string(), test.T300_PyJobDistributor.TestPyJobDistributor::test_jd(), test.T300_PyJobDistributor.TestPyJobDistributor::test_jd_at(), test.T300_PyJobDistributor.TestPyJobDistributor::test_jd_serializable_scores(), test.T300_PyJobDistributor.TestPyJobDistributor::test_jd_unserializable_scores(), test.T010_LoadPDB.LoadPDBTest::test_pdbstring_io(), pyrosetta.tests.bindings.core.test_pose.TestPoseCacheAccessor::test_pose_cache(), test.T010_LoadPDB.LoadPDBTest::test_roundtrip_file(), test.T010_LoadPDB.LoadPDBTest::test_roundtrip_pdb(), test.T010_LoadPDB.LoadPDBTest::test_roundtrip_scored_pdb(), and pyrosetta.distributed.packed_pose.core.PackedPose::update_scores().

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The documentation for this class was generated from the following file:

• src/apps/benchmark/performance/pdb_io.bench.hh