PairScore Class Reference

Public Member Functions
	PairScore (Size positionA, Size positionB)
	~PairScore ()
void	score (pose::Pose const &pose, scoring::disulfides::CentroidDisulfidePotential const &potential)
void	print (ofstream &out)
void	setFilename (string fn)
void	setDS (bool isDS)

Static Public Member Functions
static void	printHeader (ofstream &out)

Private Attributes
string	filename_
Size	posA_
string	resA_name_
int	pdb_posA_
char	chainA_
Size	posB_
string	resB_name_
int	pdb_posB_
char	chainB_
char	isDS_
char	sameSecondary_
Real	cb_score_factor_
Real	cbcb_distance_sq_
Real	centroid_distance_sq_
Real	cacbcb_angle_1_
Real	cacbcb_angle_2_
Real	cacbcbca_dihedral_
Real	backbone_dihedral_
Energy	cbcb_distance_score_
Energy	centroid_distance_score_
Energy	cacbcb_angle_1_score_
Energy	cacbcb_angle_2_score_
Energy	cacbcbca_dihedral_score_
Energy	backbone_dihedral_score_

Static Private Attributes
static const string	sep = "\t"

Constructor & Destructor Documentation

PairScore()

PairScore::PairScore ( Size  positionA, Size  positionB  )

inline

~PairScore()

PairScore::~PairScore ( )

inline

Member Function Documentation

print()

void PairScore::print ( ofstream &  out )

inline

References basic::options::OptionKeys::sc::sep.

printHeader()

static void PairScore::printHeader ( ofstream &  out )

inlinestatic

References basic::options::OptionKeys::sc::sep.

Referenced by main().

score()

void PairScore::score ( pose::Pose const &  pose, scoring::disulfides::CentroidDisulfidePotential const &  potential  )

inline

References actual_disulfide(), beta_nonlocal::pose, and same_secondary_structure().

setDS()

void PairScore::setDS ( bool  isDS )

inline

setFilename()

void PairScore::setFilename ( string  fn )

inline

References kmeans_adaptive_kernel_density_bb_dependent_rotlib::fn.

Member Data Documentation

backbone_dihedral_

Real PairScore::backbone_dihedral_

private

backbone_dihedral_score_

Energy PairScore::backbone_dihedral_score_

private

cacbcb_angle_1_

Real PairScore::cacbcb_angle_1_

private

cacbcb_angle_1_score_

Energy PairScore::cacbcb_angle_1_score_

private

cacbcb_angle_2_

Real PairScore::cacbcb_angle_2_

private

cacbcb_angle_2_score_

Energy PairScore::cacbcb_angle_2_score_

private

cacbcbca_dihedral_

Real PairScore::cacbcbca_dihedral_

private

cacbcbca_dihedral_score_

Energy PairScore::cacbcbca_dihedral_score_

private

cb_score_factor_

Real PairScore::cb_score_factor_

private

cbcb_distance_score_

Energy PairScore::cbcb_distance_score_

private

cbcb_distance_sq_

Real PairScore::cbcb_distance_sq_

private

centroid_distance_score_

Energy PairScore::centroid_distance_score_

private

centroid_distance_sq_

Real PairScore::centroid_distance_sq_

private

chainA_

char PairScore::chainA_

private

chainB_

char PairScore::chainB_

private

filename_

string PairScore::filename_

private

isDS_

char PairScore::isDS_

private

pdb_posA_

int PairScore::pdb_posA_

private

pdb_posB_

int PairScore::pdb_posB_

private

posA_

Size PairScore::posA_

private

posB_

Size PairScore::posB_

private

resA_name_

string PairScore::resA_name_

private

resB_name_

string PairScore::resB_name_

private

sameSecondary_

char PairScore::sameSecondary_

private

sep

const string PairScore::sep = "\t"

staticprivate

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The documentation for this class was generated from the following file:

• src/apps/pilot/blivens/disulfide_scorer.cc