pyrosetta.distributed.viewer.presets Namespace Reference

Functions
def	coreBoundarySurface (packed_and_poses_and_pdbs=None, *args, **kwargs)
def	ligandsAndMetals (packed_and_poses_and_pdbs=None, *args, **kwargs)
def	templatePreset (packed_and_poses_and_pdbs=None, *args, **kwargs)

Variables
string	__author__ = "Jason C. Klima"
list	__all__
	_logger = logging.getLogger("pyrosetta.distributed.viewer.presets")

Function Documentation

coreBoundarySurface()

def pyrosetta.distributed.viewer.presets.coreBoundarySurface	(		packed_and_poses_and_pdbs = None,
		*	args,
		**	kwargs
	)

Display core residues as 'blackCarbon' sticks, boundary residues as 'greyCarbon' sticks, and surface residues
as 'whiteCarbon' sticks, with 'spectrum' cartoon representation, using the default arguments in
`pyrosetta.rosetta.core.select.residue_selector.LayerSelector()` to select layers.

@klimaj

ligandsAndMetals()

def pyrosetta.distributed.viewer.presets.ligandsAndMetals	(		packed_and_poses_and_pdbs = None,
		*	args,
		**	kwargs
	)

Display residues with `ResidueProperty.LIGAND` as 'brownCarbon' sticks with opaque surface,
and `ResidueProperty.METAL` as 'chainHetatm' spheres, with 'spectrum' cartoon representation,
disulfide bonds, polar hydrogens, and dashed hydrogen bonds.

@klimaj

templatePreset()

def pyrosetta.distributed.viewer.presets.templatePreset	(		packed_and_poses_and_pdbs = None,
		*	args,
		**	kwargs
	)

Add a description of the preset Viewer here

@author

Variable Documentation

__all__

list pyrosetta.distributed.viewer.presets.__all__

private

Initial value:

=  [
    "coreBoundarySurface",
    "ligandsAndMetals"
]

__author__

string pyrosetta.distributed.viewer.presets.__author__ = "Jason C. Klima"

private

_logger

pyrosetta.distributed.viewer.presets._logger = logging.getLogger("pyrosetta.distributed.viewer.presets")

private