test.Workshop7test Namespace Reference

Variables
	extra_options
	pose = pose_from_file("../test/data/workshops/complex.start.pdb")
int	jump_num = 1
	pert_mover = rigid_moves.RigidBodyPerturbMover(jump_num, 8, 3)
	randomize1 = rigid_moves.RigidBodyRandomizeMover(pose, jump_num, rigid_moves.partner_upstream)
	randomize2 = rigid_moves.RigidBodyRandomizeMover(pose, jump_num, rigid_moves.partner_downstream)
	slid = protocols.docking.DockingSlideIntoContact(jump_num)
	slide = protocols.docking.FaDockingSlideIntoContact(jump_num)
	movemap = MoveMap()
	scorefxn = create_score_function("ref2015")
	min_mover = protocols.minimization_packing.MinMover()
	switch_low = SwitchResidueTypeSetMover("centroid")
	pose_high = Pose()
	pose_low = Pose()
	scorefxn_low = create_score_function("interchain_cen")
	dock_lowres = protocols.docking.DockingLowRes(scorefxn_low, jump_num)
	output = tempfile.mkstemp()[1]
	jd = PyJobDistributor(output, 10, scorefxn_low)
	native_pose = pose_from_file("../test/data/workshops/complex.high.pdb")
	starting_pose = Pose()
	scorefxn_high = create_score_function("ref2015.wts", "docking")
	dock_hires = protocols.docking.DockMCMProtocol()
	recover_sidechains = protocols.simple_moves.ReturnSidechainMover(pose_high)

Variable Documentation

dock_hires

test.Workshop7test.dock_hires = protocols.docking.DockMCMProtocol()

dock_lowres

test.Workshop7test.dock_lowres = protocols.docking.DockingLowRes(scorefxn_low, jump_num)

extra_options

test.Workshop7test.extra_options

jd

test.Workshop7test.jd = PyJobDistributor(output, 10, scorefxn_low)

jump_num

int test.Workshop7test.jump_num = 1

min_mover

test.Workshop7test.min_mover = protocols.minimization_packing.MinMover()

movemap

test.Workshop7test.movemap = MoveMap()

native_pose

test.Workshop7test.native_pose = pose_from_file("../test/data/workshops/complex.high.pdb")

output

test.Workshop7test.output = tempfile.mkstemp()[1]

pert_mover

test.Workshop7test.pert_mover = rigid_moves.RigidBodyPerturbMover(jump_num, 8, 3)

pose

test.Workshop7test.pose = pose_from_file("../test/data/workshops/complex.start.pdb")

pose_high

test.Workshop7test.pose_high = Pose()

pose_low

test.Workshop7test.pose_low = Pose()

randomize1

test.Workshop7test.randomize1 = rigid_moves.RigidBodyRandomizeMover(pose, jump_num, rigid_moves.partner_upstream)

randomize2

test.Workshop7test.randomize2 = rigid_moves.RigidBodyRandomizeMover(pose, jump_num, rigid_moves.partner_downstream)

recover_sidechains

test.Workshop7test.recover_sidechains = protocols.simple_moves.ReturnSidechainMover(pose_high)

scorefxn

test.Workshop7test.scorefxn = create_score_function("ref2015")

scorefxn_high

test.Workshop7test.scorefxn_high = create_score_function("ref2015.wts", "docking")

scorefxn_low

test.Workshop7test.scorefxn_low = create_score_function("interchain_cen")

slid

test.Workshop7test.slid = protocols.docking.DockingSlideIntoContact(jump_num)

slide

test.Workshop7test.slide = protocols.docking.FaDockingSlideIntoContact(jump_num)

Referenced by MPFindInterfaceTestMover.apply(), and cen_fold().

starting_pose

test.Workshop7test.starting_pose = Pose()

Referenced by HbondZinc.build_rotamers(), and main().

switch_low

test.Workshop7test.switch_low = SwitchResidueTypeSetMover("centroid")