Variables
	parser = argparse.ArgumentParser()

	nargs

	default

	type

	int

	action

	arguments = parser.parse_args()

dictionary	colors

	title = os.path.basename(job)

	trajectory_path = os.path.join(job, 'histogram/torsions.npz')

	correlation_path = os.path.join(job, 'histogram/correlations.npz')

	trajectories = np.load(trajectory_path)

	correlations = np.load(correlation_path)

	correlation = correlations[name]

	steps = np.arange(arguments.limit_display)

string	label = '%s: %s' % (title, name)

string	style = '--' if name.startswith('phi') else '-'

	loc

Variable Documentation

◆ action

correlation_time.action

◆ arguments

correlation_time.arguments = parser.parse_args()

◆ colors

dictionary correlation_time.colors

Initial value:

 =  {
     'uniform': tango.blue[1],
     'rama': tango.green[2],
     'biased-rama': tango.red[1]
 }

Referenced by dump_residue_kinemage().

◆ correlation

correlation_time.correlation = correlations[name]

◆ correlation_path

correlation_time.correlation_path = os.path.join(job, 'histogram/correlations.npz')

◆ correlations

dictionary correlation_time.correlations = np.load(correlation_path)

◆ default

correlation_time.default

◆ int

correlation_time.int

◆ label

correlation_time.label = '%s: %s' % (title, name)

◆ loc

correlation_time.loc

Referenced by detail.decimal_point(), detail.decimal_point_impl(), format(), format_to(), detail.format_value(), detail.grouping(), detail.grouping< wchar_t >(), detail.grouping_impl(), utility::vectorL< L, T, A >.index_of(), utility.is_string_numeric(), numeric::kdtree::KDNode.location(), detail::default_arg_formatter< OutputIt, Char >.operator()(), detail.thousands_sep(), detail.thousands_sep_impl(), detail.vformat(), vformat(), and vformat_to().

◆ nargs

correlation_time.nargs

Referenced by numeric::expression_parser::ArithmeticScanner.add_function().

◆ parser

correlation_time.parser = argparse.ArgumentParser()

◆ steps

correlation_time.steps = np.arange(arguments.limit_display)

Referenced by apps::pilot::momeara::HBondConformation.hbond_param_sweep(), main(), and apps::pilot::momeara::HBondConformation.run_example_hbond_sweep().

◆ style

correlation_time.style = '--' if name.startswith('phi') else '-'

◆ title

correlation_time.title = os.path.basename(job)

Referenced by percent_subangstrom.compare_benchmarks(), gaussian-sampling.plot_correlation(), gaussian-sampling.plot_histogram(), and gaussian-sampling.plot_trajectory().

◆ trajectories

correlation_time.trajectories = np.load(trajectory_path)

Referenced by MyFeaturesReporter.write_schema_to_db().

◆ trajectory_path

correlation_time.trajectory_path = os.path.join(job, 'histogram/torsions.npz')

◆ type

correlation_time.type

Variables