InterfaceDDGBindInnerJob Class Reference

Inheritance diagram for InterfaceDDGBindInnerJob:

Public Member Functions
	InterfaceDDGBindInnerJob (std::string const &input_tag, core::Size nstruct)
	~InterfaceDDGBindInnerJob () override
bool	complex () const
bool	wt () const
	Does this mutation perscribe to maintain the wild type amino acid? More...
utility::file::FileName const &	input_pdb () const
void	input_pdb (utility::file::FileName const &pdb_name)
void	complex (bool setting)
void	residue_index_description (core::pose::ResidueIndexDescriptionCOP setting)
void	new_aa (core::chemical::AA setting)
core::pose::ResidueIndexDescription const &	residue_index_description () const
core::chemical::AA	new_aa () const
bool	same (protocols::jd2::InnerJob const &other) const override
InterfaceDDGBindInnerJobOP	reference_job () const
void	reference_job (InterfaceDDGBindInnerJobOP setting)

Private Attributes
utility::file::FileName	input_pdb_
InterfaceDDGBindInnerJobOP	reference_job_
core::pose::ResidueIndexDescriptionCOP	res_ind_desc_
bool	wt_
bool	complex_
core::chemical::AA	new_aa_

Constructor & Destructor Documentation

InterfaceDDGBindInnerJob()

InterfaceDDGBindInnerJob::InterfaceDDGBindInnerJob	(	std::string const &	input_tag,
		core::Size	nstruct
	)

~InterfaceDDGBindInnerJob()

InterfaceDDGBindInnerJob::~InterfaceDDGBindInnerJob ( )

overridedefault

Member Function Documentation

complex() [1/2]

bool InterfaceDDGBindInnerJob::complex

(

)

const

References complex_.

complex() [2/2]

void InterfaceDDGBindInnerJob::complex

(

bool

setting

)

References complex_.

input_pdb() [1/2]

utility::file::FileName const & InterfaceDDGBindInnerJob::input_pdb

(

)

const

References input_pdb_.

Referenced by erraser_option.erraser_option::finalize(), erraser_option.erraser_option::read_cmdline_erraser(), erraser_option.erraser_option::read_cmdline_erraser_single_res(), and erraser_option.erraser_option::read_cmdline_full().

input_pdb() [2/2]

void InterfaceDDGBindInnerJob::input_pdb

(

utility::file::FileName const &

pdb_name

)

References input_pdb_.

Referenced by erraser_option.erraser_option::finalize(), erraser_option.erraser_option::read_cmdline_erraser(), erraser_option.erraser_option::read_cmdline_erraser_single_res(), and erraser_option.erraser_option::read_cmdline_full().

new_aa() [1/2]

core::chemical::AA InterfaceDDGBindInnerJob::new_aa

(

)

const

References new_aa_.

new_aa() [2/2]

void InterfaceDDGBindInnerJob::new_aa

(

core::chemical::AA

setting

)

References new_aa_, and wt_.

reference_job() [1/2]

InterfaceDDGBindInnerJobOP InterfaceDDGBindInnerJob::reference_job

(

)

const

References reference_job_.

reference_job() [2/2]

void InterfaceDDGBindInnerJob::reference_job

(

InterfaceDDGBindInnerJobOP

setting

)

References reference_job_.

residue_index_description() [1/2]

core::pose::ResidueIndexDescription const & InterfaceDDGBindInnerJob::residue_index_description

(

)

const

References res_ind_desc_.

residue_index_description() [2/2]

void InterfaceDDGBindInnerJob::residue_index_description

(

core::pose::ResidueIndexDescriptionCOP

setting

)

References res_ind_desc_.

same()

bool InterfaceDDGBindInnerJob::same ( protocols::jd2::InnerJob const &  other ) const

override

wt()

bool InterfaceDDGBindInnerJob::wt

(

)

const

Does this mutation perscribe to maintain the wild type amino acid?

References wt_.

Member Data Documentation

complex_

bool InterfaceDDGBindInnerJob::complex_

private

Referenced by complex().

input_pdb_

utility::file::FileName InterfaceDDGBindInnerJob::input_pdb_

private

Referenced by input_pdb().

new_aa_

core::chemical::AA InterfaceDDGBindInnerJob::new_aa_

private

Referenced by new_aa().

reference_job_

InterfaceDDGBindInnerJobOP InterfaceDDGBindInnerJob::reference_job_

private

Referenced by reference_job().

res_ind_desc_

core::pose::ResidueIndexDescriptionCOP InterfaceDDGBindInnerJob::res_ind_desc_

private

Referenced by residue_index_description().

wt_

bool InterfaceDDGBindInnerJob::wt_

private

Referenced by new_aa(), and wt().

---

The documentation for this class was generated from the following file:

• src/apps/pilot/andrew/interface_ddg_bind.cc