myspace::GraftTester Class Reference

Inheritance diagram for myspace::GraftTester:

Public Member Functions
	GraftTester ()
virtual	~GraftTester ()
virtual std::string	get_name () const
virtual void	apply (core::pose::Pose &pose)
void	set_cdrs (utility::vector1< CDRNameEnum > cdrs)
void	test_cart_graft (core::pose::Pose &start_pose)
void	test_rb_min_graft (core::pose::Pose &start_pose)

Private Member Functions
void	init (core::pose::Pose &start_pose)

Private Attributes
AntibodyInfoOP	ab_info_
AntibodyDesignModelerOP	modeler_
AntibodyDatabaseManagerOP	manager_
utility::vector1< CDRSetOptionsOP >	cdr_options_
utility::vector1< CDRNameEnum >	cdrs_
core::scoring::ScoreFunctionOP	scorefxn_
std::string	mode_
core::Size	rounds_
std::map< CDRNameEnum, utility::vector1< protocols::antibody::CDRPose > >	cdr_set_

Constructor & Destructor Documentation

GraftTester()

myspace::GraftTester::GraftTester ( )

inline

~GraftTester()

virtual myspace::GraftTester::~GraftTester ( )

inlinevirtual

Member Function Documentation

apply()

virtual void myspace::GraftTester::apply ( core::pose::Pose &  pose )

inlinevirtual

References basic::init(), and beta_nonlocal::pose.

Referenced by pyrosetta.distributed.tasks.rosetta_scripts.BaseRosettaScriptsTask::execute().

get_name()

virtual std::string myspace::GraftTester::get_name ( ) const

inlinevirtual

init()

void myspace::GraftTester::init ( core::pose::Pose &  start_pose )

inlineprivate

References test.G201_Module_Structure::cdrs, create_a3b_hbs::i, subloop_histogram::size, and TR.

set_cdrs()

void myspace::GraftTester::set_cdrs ( utility::vector1< CDRNameEnum >  cdrs )

inline

References test.G201_Module_Structure::cdrs.

test_cart_graft()

void myspace::GraftTester::test_cart_graft ( core::pose::Pose &  start_pose )

inline

References create_a3b_hbs::i, beta_nonlocal::pose, numeric::random::RandomGenerator::random_range(), RG, subloop_histogram::size, utility::to_string(), and TR.

test_rb_min_graft()

void myspace::GraftTester::test_rb_min_graft ( core::pose::Pose &  start_pose )

inline

References end, fold_tree_from_loops(), create_a3b_hbs::i, vancomycin::min_mover, basic::options::OptionKeys::in::file::movemap, beta_nonlocal::pose, numeric::random::RandomGenerator::random_range(), RG, subloop_histogram::size, basic::options::OptionKeys::cutoutdomain::start, TR, and utility_exit_with_message.

Member Data Documentation

ab_info_

AntibodyInfoOP myspace::GraftTester::ab_info_

private

cdr_options_

utility::vector1<CDRSetOptionsOP> myspace::GraftTester::cdr_options_

private

cdr_set_

std::map<CDRNameEnum, utility::vector1<protocols::antibody::CDRPose> > myspace::GraftTester::cdr_set_

private

cdrs_

utility::vector1<CDRNameEnum> myspace::GraftTester::cdrs_

private

manager_

AntibodyDatabaseManagerOP myspace::GraftTester::manager_

private

mode_

std::string myspace::GraftTester::mode_

private

modeler_

AntibodyDesignModelerOP myspace::GraftTester::modeler_

private

rounds_

core::Size myspace::GraftTester::rounds_

private

scorefxn_

core::scoring::ScoreFunctionOP myspace::GraftTester::scorefxn_

private

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The documentation for this class was generated from the following file:

• src/apps/pilot/jadolfbr/testing/test_grafting.cc