protocols::analysis Namespace Reference

Namespaces
	burial_metrics
	simple_metrics

Classes
class	GlycanInfoMover
	Simple class for outputting glycan information. Currently, it simply prints the information. More...
class	GlycanInfoMoverCreator
struct	PerResidueInterfaceData
	All per residue interface data and residue averages. Interface Residues only. More...
struct	InterfaceData
	All interface data. Unless otherwise specified, they refer specifically to the interface. More...
class	InterfaceAnalyzerMover
	Class for analyzing interfaces of a pose. Many metrics are calculated and accessible after the apply method. More...
class	InterfaceAnalyzerMoverCreator
class	LoopAnalyzerMover
class	LoopAnalyzerMoverCreator
class	PackStatMover

Typedefs
typedef utility::pointer::shared_ptr< GlycanInfoMover >	GlycanInfoMoverOP
typedef utility::pointer::shared_ptr< GlycanInfoMover const >	GlycanInfoMoverCOP
typedef utility::pointer::shared_ptr< InterfaceAnalyzerMover >	InterfaceAnalyzerMoverOP
typedef utility::pointer::shared_ptr< InterfaceAnalyzerMover const >	InterfaceAnalyzerMoverCOP
typedef utility::pointer::shared_ptr< LoopAnalyzerMover >	LoopAnalyzerMoverOP
typedef utility::pointer::shared_ptr< PackStatMover >	PackStatMoverOP

Enumerations
enum	InterfaceRegion { total = 1 , side1 , side2 }

Functions
std::ostream &	operator<< (std::ostream &os, GlycanInfoMover const &mover)
	private methods /// More...
std::ostream &	which_ostream (std::ostream &ost, std::ostream &oss, bool const tracer)
	stupid helper function needed because ternary operator does not allow variable return types More...
std::string	LoopAnalyzerMover_subelement_ct_name (std::string const &name)

Typedef Documentation

GlycanInfoMoverCOP

typedef utility::pointer::shared_ptr< GlycanInfoMover const > protocols::analysis::GlycanInfoMoverCOP

GlycanInfoMoverOP

typedef utility::pointer::shared_ptr< GlycanInfoMover > protocols::analysis::GlycanInfoMoverOP

InterfaceAnalyzerMoverCOP

typedef utility::pointer::shared_ptr< InterfaceAnalyzerMover const > protocols::analysis::InterfaceAnalyzerMoverCOP

InterfaceAnalyzerMoverOP

typedef utility::pointer::shared_ptr< InterfaceAnalyzerMover > protocols::analysis::InterfaceAnalyzerMoverOP

LoopAnalyzerMoverOP

typedef utility::pointer::shared_ptr< LoopAnalyzerMover > protocols::analysis::LoopAnalyzerMoverOP

PackStatMoverOP

typedef utility::pointer::shared_ptr< PackStatMover > protocols::analysis::PackStatMoverOP

Enumeration Type Documentation

InterfaceRegion

enum protocols::analysis::InterfaceRegion

Enumerator
total
side1
side2

Function Documentation

LoopAnalyzerMover_subelement_ct_name()

std::string protocols::analysis::LoopAnalyzerMover_subelement_ct_name

(

std::string const &

name

)

References protocols::moves::Mover::name().

Referenced by protocols::analysis::LoopAnalyzerMover::provide_xml_schema().

operator<<()

std::ostream & protocols::analysis::operator<<	(	std::ostream &	os,
		GlycanInfoMover const &	mover
	)

private methods ///

References protocols::analysis::GlycanInfoMover::show().

which_ostream()

std::ostream& protocols::analysis::which_ostream	(	std::ostream &	ost,
		std::ostream &	oss,
		bool const	tracer
	)

stupid helper function needed because ternary operator does not allow variable return types

References protocols::frag_picker::tracer().

Referenced by protocols::analysis::LoopAnalyzerMover::apply(), protocols::analysis::InterfaceAnalyzerMover::print_pymol_selection_of_hbond_unsat(), and protocols::analysis::InterfaceAnalyzerMover::print_pymol_selection_of_interface_residues().