RB_geometry.hh File Reference

#include <core/types.hh>
#include <core/pose/Pose.fwd.hh>
#include <core/conformation/Residue.fwd.hh>
#include <numeric/xyzMatrix.fwd.hh>
#include <utility/vector1.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::geometry

Functions
numeric::xyzMatrix_real	protocols::geometry::random_reorientation_matrix (const core::Real phi_range, const core::Real psi_range)
core::Vector	protocols::geometry::centroid_by_residues (core::conformation::ResidueCOPs residue_c_pointers)
core::Vector	protocols::geometry::centroid_by_chains (core::pose::Pose const &pose, utility::vector1< core::Size > chain_ids)
core::Vector	protocols::geometry::centroid_by_chain (core::pose::Pose const &pose, core::Size const chain_id)
void	protocols::geometry::centroids_by_jump (core::pose::Pose const &pose, core::Size const jump_id, core::Vector &upstream_ctrd, core::Vector &downstream_ctrd)
	Unweighted centroids of all atoms upstream of the jump vs. all atoms downstream of the jump. More...
void	protocols::geometry::centroids_by_jump (core::pose::Pose const &pose, core::Size const jump_id, core::Vector &upstream_ctrd, core::Vector &downstream_ctrd, utility::vector1< bool > ok_for_centroid_calculation)
	Unweighted centroids of all atoms upstream of the jump vs. all atoms downstream of the jump. More...
std::pair< core::Vector, core::Vector >	protocols::geometry::centroid_pair_by_jump (core::pose::Pose const &pose, core::Size jump_id)
core::Vector	protocols::geometry::downstream_centroid_by_jump (core::pose::Pose const &pose, core::Size jump_id)
core::Vector	protocols::geometry::upstream_centroid_by_jump (core::pose::Pose const &pose, core::Size jump_id)
void	protocols::geometry::centroids_by_jump_int (core::pose::Pose const &pose, core::Size jump_id, core::Vector &upstream_ctrd, core::Vector &downstream_ctrd)
	Unweighted centroids of all atoms upstream of the jump vs. all atoms downstream of the jump for interface residues only. needed to calculate rb_centers for fullatom docking - Sid C. More...
numeric::xyzVector< core::Real >	protocols::geometry::center_of_mass (core::pose::Pose const &pose, int const start, int const stop)
	calculates the center of mass of a pose More...