protocols Directory Reference

Directory dependency graph for protocols:

Directories
directory	aa_composition
directory	abinitio
directory	analysis
directory	anchored_design
directory	antibody
directory	antibody_legacy
directory	backbone_moves
directory	backrub
directory	boinc
directory	branch_angle
directory	buns
directory	calc_taskop_filters
directory	calc_taskop_movers
directory	canonical_sampling
directory	carbohydrates
directory	cartesian
directory	checkpoint
directory	chemically_conjugated_docking
directory	chemistries
directory	chromophore
directory	cluster
directory	comparative_modeling
directory	constel
directory	constraint_filters
directory	constraint_generator
directory	constraint_movers
directory	constraints_additional
directory	contact_map
directory	coupled_moves
directory	cryst
directory	cutoutdomain
directory	cyclic_peptide
directory	cyclic_peptide_predict
directory	ddg
directory	denovo_design
directory	design_opt
directory	dna
directory	dna_dock
directory	docking
directory	domain_assembly
directory	drug_design
directory	electron_density
directory	energy_based_clustering
directory	environment
directory	enzdes
directory	enzymatic_movers
directory	esm_perplexity
directory	evaluation
directory	evolution
directory	farnesyl
directory	features
directory	fibril
directory	filters
directory	fldsgn
directory	flexpack
directory	flexpep_docking
directory	floppy_tail
directory	flxbb
directory	fold_from_loops
directory	forge
directory	frag_picker
directory	frags
directory	generalized_kinematic_closure
directory	genetic_algorithm
directory	glycan_docking
directory	glycopeptide_docking
directory	grafting
directory	hbnet
directory	helical_bundle
directory	helical_bundle_predict
directory	helix_capper
directory	hotspot_hashing
directory	hybridization
directory	hydrate
directory	idealize
directory	indel
directory	indexed_structure_store
directory	init
directory	interface
directory	inverse_folding
directory	jd2
directory	jd3
directory	jobdist
directory	jumping
directory	kinematic_closure
directory	kinmatch
directory	legacy_sewing
directory	ligand_docking
directory	loop_build
directory	loop_grower
directory	loop_modeler
directory	loop_modeling
directory	loophash
directory	loops
directory	magnesium
directory	mainchain_potential
directory	make_rot_lib
directory	match
directory	matdes
directory	md
directory	mean_field
directory	medal
directory	membrane
directory	membrane_benchmark
directory	metal_interface
directory	minimization_packing
directory	monte_carlo
directory	motif_grafting
directory	motifs
directory	moves
directory	mpi_refinement
directory	multistage_rosetta_scripts
directory	multistate_design
directory	ncbb
directory	neighbor
directory	network
directory	nmr
directory	noesy_assign
directory	nonlocal
directory	normalmode
directory	optimize_weights
directory	pack_daemon
directory	pack_interface
directory	parser
directory	pb_potential
directory	pdbinfo_manipulations
directory	peptide_deriver
directory	pmut_scan
directory	pockets
directory	pose_creation
directory	pose_length_moves
directory	pose_metric_calculators
directory	pose_reporters
directory	pose_selectors
directory	pose_sewing
directory	protein_interface_design
directory	protein_mpnn
directory	ptm_prediction
directory	qsar
directory	quantum_annealing
directory	rbsegment_relax
directory	recces
directory	recon_design
directory	relax
directory	residue_optimization
directory	residue_selectors
directory	rigid
directory	rna
directory	rosetta_scripts
directory	rotamer_recovery
directory	RotamerDump
directory	rpc
directory	sasa_scores
directory	score_filters
directory	scoring
directory	seeded_abinitio
directory	sewing
directory	sic_dock
directory	simple_ddg
directory	simple_filters
directory	simple_moves
directory	simple_pose_metric_calculators
directory	simple_task_operations
directory	sparta
directory	splice
directory	ss_prediction
directory	star
directory	stepwise
directory	struct_fragment
directory	surface_docking
directory	switches
directory	symmetric_docking
directory	symmetry
directory	task_operations
directory	tcr
directory	testing
directory	toolbox
directory	topology_broker
directory	trajectory
directory	trRosetta
directory	trRosetta_protocols
directory	unfolded_state_energy_calculator
directory	vardist_solaccess
directory	viewer
directory	vip
directory	wum