Directory dependency graph for floppy_tail:
Files | |
| file | FloppyTail_publication.cc |
| FloppyTail extra functions from original publication - this calculates some statistics used for the first published use of the code (Kleiger G, Saha A, Lewis S, Kuhlman B, Deshaies RJ. Rapid E2-E3 assembly and disassembly enable processive ubiquitylation of cullin-RING ubiquitin ligase substrates. Cell. 2009 Nov 25;139(5):957-68. PubMed PMID: 19945379.) | |
| file | FloppyTail_publication.hh |
| FloppyTail extra functions from original publication - this calculates some statistics used for the first published use of the code (Kleiger G, Saha A, Lewis S, Kuhlman B, Deshaies RJ. Rapid E2-E3 assembly and disassembly enable processive ubiquitylation of cullin-RING ubiquitin ligase substrates. Cell. 2009 Nov 25;139(5):957-68. PubMed PMID: 19945379.) | |
| file | FloppyTailMover.cc |
| This app was initially intended for modeling the binding of a long unstructured C-terminal tail to some other part of a protein. It now works for N-terminal, C-terminal, and internal flexible regions. It works best as a method for sampling space to see what is possible, preferably in conjunction with extensive experimental constraints. It is not meant to produce ab-initio style models of folded complexes. It has now been expanded to work on symmetric proteins (tested on a homohexamer). Symmetry has not been tested with some flags. To run symmetry one needs a symm file and movemap. Symmetry has not been tested with fragments or constraints. | |
| file | FloppyTailMover.fwd.hh |
| FloppyTail forward declaration. | |
| file | FloppyTailMover.hh |
| FloppyTail headers. | |
