|
| file | AtomTreeDiffJobInputter.cc |
| |
| file | AtomTreeDiffJobInputter.fwd.hh |
| |
| file | AtomTreeDiffJobInputter.hh |
| | header file for AtomTreeDiffJobInputter class
|
| |
| file | AtomTreeDiffJobInputterCreator.hh |
| |
| file | AtomTreeDiffJobOutputter.cc |
| | AtomTreeDiffJobOutputter.
|
| |
| file | AtomTreeDiffJobOutputter.fwd.hh |
| | header file for AtomTreeDiffJobOutputter class, part of August 2008 job distributor as planned at RosettaCon08
|
| |
| file | AtomTreeDiffJobOutputter.hh |
| | header file for AtomTreeDiffJobOutputter class
|
| |
| file | AtomTreeDiffJobOutputterCreator.hh |
| |
| file | BatchJobInputter.cc |
| |
| file | BatchJobInputter.fwd.hh |
| |
| file | BatchJobInputter.hh |
| | header file for BatchJobInputter class
|
| |
| file | BOINCJobDistributor.cc |
| | implementation of BOINCJobDistributor
|
| |
| file | BOINCJobDistributor.hh |
| | implementation of BOINCJobDistributor
|
| |
| file | EmptyPoseJobInputter.cc |
| | Base class EmptyPoseJobInputter.
|
| |
| file | EmptyPoseJobInputter.fwd.hh |
| | header file for EmptyPoseJobInputter class.
|
| |
| file | EmptyPoseJobInputter.hh |
| | header file for EmptyPoseJobInputter class
|
| |
| file | EmptyPoseJobInputterCreator.hh |
| | creator for EmptyPoseJobInputter
|
| |
| file | EnsembleJobInputter.cc |
| | A Job Inputter for distributing a job based on a set of input structures that make up an ensemble.
|
| |
| file | EnsembleJobInputter.fwd.hh |
| | A Job Inputter for distributing a job based on a set of input structures that make up an ensemble.
|
| |
| file | EnsembleJobInputter.hh |
| | A Job Inputter for distributing a job based on a set of input structures that make up an ensemble.
|
| |
| file | EnsembleJobInputterCreator.hh |
| |
| file | FileJobOutputter.cc |
| | August 2008 job distributor as planned at RosettaCon08 - FileJobOutputter.
|
| |
| file | FileJobOutputter.fwd.hh |
| | header file for FileJobOutputter class, part of August 2008 job distributor as planned at RosettaCon08
|
| |
| file | FileJobOutputter.hh |
| | header file for FileJobOutputter class, part of August 2008 job distributor as planned at RosettaCon08
|
| |
| file | FileSystemJobDistributor.cc |
| | August 2008 job distributor as planned at RosettaCon08 - Simplest class FileSystemJobDistributor.
|
| |
| file | FileSystemJobDistributor.fwd.hh |
| | August 2008 job distributor as planned at RosettaCon08 - Simplest class FileSystemJobDistributor.
|
| |
| file | FileSystemJobDistributor.hh |
| | August 2008 job distributor as planned at RosettaCon08 - Simplest class FileSystemJobDistributor.
|
| |
| file | InnerJob.cc |
| |
| file | InnerJob.fwd.hh |
| | header file for InnerJob class, part of August 2008 job distributor as planned at RosettaCon08
|
| |
| file | InnerJob.hh |
| | header file for Job classes, part of August 2008 job distributor as planned at RosettaCon08. This file is responsible for three ideas: "inner" jobs, "outer" jobs (with which the job distributor works) and job container (currently just typdefed in the .fwd.hh)
|
| |
| file | InnerMultiThreadingJob.cc |
| |
| file | InnerMultiThreadingJob.fwd.hh |
| | header file for Job classes, part of August 2008 job distributor as planned at RosettaCon08
|
| |
| file | InnerMultiThreadingJob.hh |
| |
| file | internal_util.cc |
| | Utilities for JD2, intended to be used within the JD2 system itself.
|
| |
| file | internal_util.hh |
| | Utilities for JD2, intended to be used within the JD2 system itself.
|
| |
| file | Job.cc |
| | August 2008 job distributor as planned at RosettaCon08 - Job classes.
|
| |
| file | Job.fwd.hh |
| | header file for Job classes, part of August 2008 job distributor as planned at RosettaCon08
|
| |
| file | Job.hh |
| | header file for ThreadingJob classes, part of August 2008 job distributor as planned at RosettaCon08. This file is responsible for three ideas: "inner" jobs, "outer" jobs (with which the job distributor works) and job container (currently just typdefed in the .fwd.hh)
|
| |
| file | JobDistributor.cc |
| | August 2008 job distributor as planned at RosettaCon08 - Base class.
|
| |
| file | JobDistributor.fwd.hh |
| | August 2008 job distributor as planned at RosettaCon08 - Base class.
|
| |
| file | JobDistributor.hh |
| |
| file | JobDistributorFactory.cc |
| |
| file | JobDistributorFactory.fwd.hh |
| |
| file | JobDistributorFactory.hh |
| |
| file | JobInputter.cc |
| | August 2008 job distributor as planned at RosettaCon08 - Interface base class JobInputter.
|
| |
| file | JobInputter.fwd.hh |
| | header file for JobInputter class, part of August 2008 job distributor as planned at RosettaCon08
|
| |
| file | JobInputter.hh |
| | header file for JobInputter class, part of August 2008 job distributor as planned at RosettaCon08
|
| |
| file | JobInputterCreator.cc |
| |
| file | JobInputterCreator.hh |
| | Base class for JobInputterCreators for the JobInputter load-time factory registration scheme.
|
| |
| file | JobInputterFactory.cc |
| | JobInputterCreator base.
|
| |
| file | JobInputterFactory.fwd.hh |
| | JobInputterFactory forward header.
|
| |
| file | JobInputterFactory.hh |
| | JobInputterFactory.
|
| |
| file | JobOutputter.cc |
| | August 2008 job distributor as planned at RosettaCon08 - Base class JobOutputter.
|
| |
| file | JobOutputter.fwd.hh |
| | header file for JobOutputter class, part of August 2008 job distributor as planned at RosettaCon08
|
| |
| file | JobOutputter.hh |
| | header file for JobOutputter class, part of August 2008 job distributor as planned at RosettaCon08
|
| |
| file | JobOutputterCreator.cc |
| |
| file | JobOutputterCreator.hh |
| | Base class for JobOutputterCreators for the JobOutputter load-time factory registration scheme.
|
| |
| file | JobOutputterFactory.cc |
| | JobOutputterCreator base.
|
| |
| file | JobOutputterFactory.fwd.hh |
| | JobOutputterFactory forward header.
|
| |
| file | JobOutputterFactory.hh |
| | JobOutputterFactory.
|
| |
| file | JobOutputterObserver.hh |
| | classes that want to add score_value pairs to poses before they are output should derive from this Observer class
|
| |
| file | JobsContainer.cc |
| | A container for an array of JobOPs.
|
| |
| file | JobsContainer.fwd.hh |
| | header file for JobsContainer classes.
|
| |
| file | JobsContainer.hh |
| | header file for Job classes, part of August 2008 job distributor as planned at RosettaCon08. This file is responsible for three ideas: "inner" jobs, "outer" jobs (with which the job distributor works) and job container (currently just typdefed in the .fwd.hh)
|
| |
| file | LargeNstructJobInputter.cc |
| | A JobInputter for cases where the number of jobs is large enough to fill up memory.
|
| |
| file | LargeNstructJobInputter.fwd.hh |
| | Owning pointers and so forth for a JobInputter for cases where the number of jobs is large enough to fill up memory.
|
| |
| file | LargeNstructJobInputter.hh |
| | Header file for a JobInputter for cases where the number of jobs is large enough to fill up memory.
|
| |
| file | LargeNstructJobInputterCreator.hh |
| | Creator for a JobInputter for cases where the number of jobs is large enough to fill up memory.
|
| |
| file | LazySilentFileJobInputter.cc |
| |
| file | LazySilentFileJobInputter.fwd.hh |
| |
| file | LazySilentFileJobInputter.hh |
| |
| file | LazySilentFileJobInputterCreator.hh |
| |
| file | mmCIFJobOutputter.cc |
| | mmCIFJobOutputter writes mmCIF formatted outputs from finished Jobs in JD2
|
| |
| file | mmCIFJobOutputter.fwd.hh |
| | header file for mmCIFJobOutputter class, written post chemXRW 2016
|
| |
| file | mmCIFJobOutputter.hh |
| | header file for mmCIFJobOutputter class, part of JD2, implemented post 2016-chemXRW
|
| |
| file | mmCIFJobOutputterCreator.hh |
| |
| file | mmtfJobOutputter.cc |
| | mmtfJobOutputter writes mmtf formatted outputs from finished Jobs in JD2
|
| |
| file | mmtfJobOutputter.fwd.hh |
| | header file for mmtfJobOutputter class
|
| |
| file | mmtfJobOutputter.hh |
| | header file for mmtfJobOutputter class, part of JD2, implemented post 2016-chemXRW
|
| |
| file | mmtfJobOutputterCreator.hh |
| |
| file | MpiFileBuffer.cc |
| |
| file | MpiFileBuffer.fwd.hh |
| |
| file | MpiFileBuffer.hh |
| | header file for MPISilentFileJobOutputter class, part of August 2008 job distributor as planned at RosettaCon08
|
| |
| file | MPIFileBufJobDistributor.cc |
| | implementation of MPIFileBufJobDistributor
|
| |
| file | MPIFileBufJobDistributor.fwd.hh |
| |
| file | MPIFileBufJobDistributor.hh |
| |
| file | MPIMultiCommJobDistributor.cc |
| | implementation of MPIMultiCommJobDistributor
|
| |
| file | MPIMultiCommJobDistributor.fwd.hh |
| |
| file | MPIMultiCommJobDistributor.hh |
| |
| file | MPIWorkPartitionJobDistributor.cc |
| | implementation of MPIWorkPartitionJobDistributor - intended for MPI jobs on small numbers of nodes where the load can be balanced equally by the user
|
| |
| file | MPIWorkPartitionJobDistributor.fwd.hh |
| | forward header for MPIWorkPartitonJobDistributor
|
| |
| file | MPIWorkPartitionJobDistributor.hh |
| | header for MPIWorkPartitionJobDistributor - intended for MPI jobs on small numbers of nodes where the load can be balanced equally by the user
|
| |
| file | MPIWorkPoolJobDistributor.cc |
| | implementation of MPIWorkPoolJobDistributor
|
| |
| file | MPIWorkPoolJobDistributor.fwd.hh |
| | forward header for MPIWorkPoolJobDistributor
|
| |
| file | MPIWorkPoolJobDistributor.hh |
| | header for MPIWorkPoolJobDistributor - intended for continuous resamplig jobs that spawn new jobs based on a pool/archive of structures
|
| |
| file | MultiThreadingJob.cc |
| |
| file | MultiThreadingJob.fwd.hh |
| | header file for Job classes, part of August 2008 job distributor as planned at RosettaCon08
|
| |
| file | MultiThreadingJob.hh |
| |
| file | NoOutputJobOutputter.hh |
| | header file for NoOutputJobOutputter class, part of August 2008 job distributor as planned at RosettaCon08
|
| |
| file | NoOutputJobOutputterCreator.cc |
| | NoOutputJobOutputCreator class, part of November 2011 XRW2.
|
| |
| file | NoOutputJobOutputterCreator.hh |
| |
| file | PDBJobInputter.cc |
| | August 2008 job distributor as planned at RosettaCon08 - Base class PDBJobInputter.
|
| |
| file | PDBJobInputter.fwd.hh |
| | header file for PDBJobInputter class, part of August 2008 job distributor as planned at RosettaCon08
|
| |
| file | PDBJobInputter.hh |
| | header file for PDBJobInputter class, part of August 2008 job distributor as planned at RosettaCon08
|
| |
| file | PDBJobInputterCreator.hh |
| |
| file | PDBJobOutputter.cc |
| | August 2008 job distributor as planned at RosettaCon08 - PDBJobOutputter.
|
| |
| file | PDBJobOutputter.fwd.hh |
| | header file for PDBJobOutputter class, part of August 2008 job distributor as planned at RosettaCon08
|
| |
| file | PDBJobOutputter.hh |
| | header file for PDBJobOutputter class, part of August 2008 job distributor as planned at RosettaCon08
|
| |
| file | PDBJobOutputterCreator.hh |
| |
| file | PoseInputStreamJobInputter.cc |
| |
| file | PoseInputStreamJobInputter.fwd.hh |
| |
| file | PoseInputStreamJobInputter.hh |
| | header file for PoseInputStreamJobInputter class
|
| |
| file | PoseInputStreamJobInputterCreator.hh |
| |
| file | RNA_DeNovoJobOutputter.cc |
| |
| file | RNA_DeNovoJobOutputter.fwd.hh |
| | header file for RNA_DeNovoJobOutputter class, part of August 2008 job distributor as planned at RosettaCon08
|
| |
| file | RNA_DeNovoJobOutputter.hh |
| | header file for RNA_DeNovoJobOutputter class, part of August 2008 job distributor as planned at RosettaCon08
|
| |
| file | RNA_DeNovoJobOutputterCreator.hh |
| |
| file | ScoreOnlyJobOutputter.cc |
| |
| file | ScoreOnlyJobOutputter.fwd.hh |
| |
| file | ScoreOnlyJobOutputter.hh |
| |
| file | ScoreOnlyJobOutputterCreator.hh |
| |
| file | ScreeningJobInputter.cc |
| | The ScreeningJobInputter @detail The ScreeningJobInputter simplifies the process of inputting and handling input to a vHTS protocol. The ScreeningJobInputter takes in a JSON file using the -in:file:screening_job_file option This file is in the following format: { "jobs" : [ { "group_name" : "group_name_a", "proteins" : ["protein_a.pdb", "protein_b.pdb"], "ligands" : ["ligand_a.pdb", "ligand_b.pdb"] } ] "params : [ "aaa.param", "aab.param".
|
| |
| file | ScreeningJobInputter.fwd.hh |
| | The ScreeningJobInputter forward headers.
|
| |
| file | ScreeningJobInputter.hh |
| | The ScreeningJobInputter forward headers.
|
| |
| file | ScreeningJobInputterCreator.hh |
| | Creator for ScreeningJobInputter.
|
| |
| file | SerializedPoseJobInputter.cc |
| | parses inputs as serialized poses
|
| |
| file | SerializedPoseJobInputter.fwd.hh |
| | forward header file for SerializedPoseJobInputter class
|
| |
| file | SerializedPoseJobInputter.hh |
| | parses inputs as serialized poses
|
| |
| file | SerializedPoseJobInputterCreator.hh |
| | parses inputs as serialized poses
|
| |
| file | SerializedPoseJobOutputter.cc |
| | outputs serialized Poses that should only be read in by applications from the same git checkout on the same computer
|
| |
| file | SerializedPoseJobOutputter.fwd.hh |
| |
| file | SerializedPoseJobOutputter.hh |
| | outputs serialized Poses that should only be read in by applications from the same git checkout on the same computer
|
| |
| file | SerializedPoseJobOutputterCreator.hh |
| |
| file | ShuffleJobDistributor.cc |
| |
| file | ShuffleJobDistributor.hh |
| | implementation of ShuffleFileSystemJobDistributor
|
| |
| file | SilentFileJobInputter.cc |
| |
| file | SilentFileJobInputter.fwd.hh |
| |
| file | SilentFileJobInputter.hh |
| | header file for SilentFileJobInputter class
|
| |
| file | SilentFileJobInputterCreator.hh |
| |
| file | SilentFileJobOutputter.cc |
| |
| file | SilentFileJobOutputter.fwd.hh |
| | header file for SilentFileJobOutputter class, part of August 2008 job distributor as planned at RosettaCon08
|
| |
| file | SilentFileJobOutputter.hh |
| | header file for SilentFileJobOutputter class, part of August 2008 job distributor as planned at RosettaCon08
|
| |
| file | SilentFileJobOutputterCreator.hh |
| |
| file | SingleFileBuffer.cc |
| |
| file | SingleFileBuffer.fwd.hh |
| |
| file | SingleFileBuffer.hh |
| |
| file | util.cc |
| | Utilities for JD2, which are somewhat safe to use outside of the JD2 system itself.
|
| |
| file | util.hh |
| | Utilities for JD2, which are somewhat safe to use outside of the JD2 system itself.
|
| |
| file | VectorPoseJobDistributor.cc |
| | Job distributor subclass for running RECON multistate design.
|
| |
| file | VectorPoseJobDistributor.fwd.hh |
| | Job distributor for running RECON MSD under MPI.
|
| |
| file | VectorPoseJobDistributor.hh |
| | Job distributor subclass for running RECON multistate design.
|
| |
| file | wwPDBJobOutputter.cc |
| | wwPDBJobOutputter class, interstitial between FileJobOutputter and PDBJobOutputter or mmCIFJobOutputter to share functionality.
|
| |
| file | wwPDBJobOutputter.fwd.hh |
| | header file for wwPDBJobOutputter class, interstitial between FileJobOutputter and PDBJobOutputter or mmCIFJobOutputter to share functionality.
|
| |
| file | wwPDBJobOutputter.hh |
| | header file for wwPDBJobOutputter class, interstitial between FileJobOutputter and PDBJobOutputter or mmCIFJobOutputter to share functionality.
|
| |
