Directory dependency graph for dna:
Files | |
| file | DesignProteinBackboneAroundDNA.cc |
| performs a round flexible backbone sampling/design. (Interim(?) encapsulation of some loose code in a mover class.) | |
| file | DesignProteinBackboneAroundDNA.fwd.hh |
| file | DesignProteinBackboneAroundDNA.hh |
| performs a round flexible backbone sampling/design. (Interim(?) encapsulation of some loose code in a mover class.) | |
| file | DesignProteinBackboneAroundDNACreator.hh |
| file | DnaChains.cc |
| file | DnaChains.fwd.hh |
| file | DnaChains.hh |
| a descriptive but lightweight class to keep track of (usually basepaired) dna chains | |
| file | DnaDesignDef.cc |
| file | DnaDesignDef.fwd.hh |
| file | DnaDesignDef.hh |
| file | DnaInterfaceFinder.cc |
| file | DnaInterfaceFinder.fwd.hh |
| file | DnaInterfaceFinder.hh |
| file | DnaInterfaceMinMover.cc |
| file | DnaInterfaceMinMover.fwd.hh |
| file | DnaInterfaceMinMover.hh |
| A mover that minimizes protein residues near DNA. | |
| file | DnaInterfaceMinMoverCreator.hh |
| file | DnaInterfaceMultiStateDesign.cc |
| file | DnaInterfaceMultiStateDesign.fwd.hh |
| file | DnaInterfaceMultiStateDesign.hh |
| file | DnaInterfaceMultiStateDesignCreator.hh |
| file | DnaInterfacePacker.cc |
| file | DnaInterfacePacker.fwd.hh |
| file | DnaInterfacePacker.hh |
| Intended to perform anything one would want to do in a DNA interface that uses a single incarnation of the RotamerSets/InteractionGraph combo. | |
| file | DnaInterfacePackerCreator.hh |
| file | DNAParameters.cc |
| A class to query for base-paired partners as well as base pair and base step parameters. | |
| file | DNAParameters.fwd.hh |
| file | DNAParameters.hh |
| A class to query for base-paired partners as well as base pair and base step parameters. | |
| file | PDBOutput.cc |
| file | PDBOutput.fwd.hh |
| file | PDBOutput.hh |
| file | RestrictDesignToProteinDNAInterface.cc |
| file | RestrictDesignToProteinDNAInterface.fwd.hh |
| file | RestrictDesignToProteinDNAInterface.hh |
| When operated on a PackerTask, pack/design is limited to the protein-DNA interface. | |
| file | RestrictDesignToProteinDNAInterfaceCreator.hh |
| file | RotamerDNAHBondFilter.cc |
| filters rotamers for contact to DNA in an -ex dependent manner | |
| file | RotamerDNAHBondFilter.fwd.hh |
| file | RotamerDNAHBondFilter.hh |
| filters rotamers for contact to DNA in an -ex dependent manner | |
| file | SeparateDnaFromNonDna.cc |
| file | SeparateDnaFromNonDna.fwd.hh |
| file | SeparateDnaFromNonDna.hh |
| file | SeparateDnaFromNonDnaCreator.hh |
| file | typedefs.hh |
| file | util.cc |
| file | util.hh |
| file | WatsonCrickRotamerCouplings.cc |
| file | WatsonCrickRotamerCouplings.fwd.hh |
| file | WatsonCrickRotamerCouplings.hh |
| When operated on a PackerTask, adds RotamerCouplings to it that will trigger the use of a FixbbCoupledRotamerAnnealer by pack_rotamers, which will make base-paired DNA rotamer substitutions. | |
| file | WatsonCrickRotamerCouplingsCreator.hh |
