Rosetta
|
Directories | |
directory | asym_fold_and_dock |
directory | bb_sampler |
directory | bin_transitions |
directory | chiral |
directory | rational_mc |
directory | sidechain_moves |
Files | |
file | AddCavitiesMover.cc |
file | AddCavitiesMover.hh |
file | AddChainMover.cc |
file | AddChainMover.fwd.hh |
Add chain to an existing pose (as a new chain) | |
file | AddChainMover.hh |
switch the chain order | |
file | AddChainMoverCreator.hh |
file | AddJobPairData.cc |
A really simple mover that takes some data in through xml and appends it to the pose. | |
file | AddJobPairData.fwd.hh |
Forward Header file for the AddJobPairData Mover. | |
file | AddJobPairData.hh |
Header file for the AddJobPairData Mover. | |
file | AddJobPairDataCreator.hh |
MoverCreator definitions for the AddJobPairData mover. | |
file | AddPDBInfoMover.cc |
file | AddPDBInfoMover.fwd.hh |
Forward header file for AddPDBInfoMover. | |
file | AddPDBInfoMover.hh |
file | AddPDBInfoMoverCreator.hh |
file | AddResidueCouplingConstraint.cc |
file | AddResidueCouplingConstraint.fwd.hh |
file | AddResidueCouplingConstraint.hh |
file | AddResidueCouplingConstraintCreator.hh |
file | AddResidueLabelMover.cc |
file | AddResidueLabelMover.fwd.hh |
file | AddResidueLabelMover.hh |
file | AddResidueLabelMoverCreator.hh |
This class will create instances of AddResidueLabelMover for the MoverFactory. | |
file | AddSapConstraintMover.cc |
Mover that adds the SapConstraint to the pose. | |
file | AddSapConstraintMover.fwd.hh |
Mover that adds the SapConstraint to the pose. | |
file | AddSapConstraintMover.hh |
Mover that adds the SapConstraint to the pose. | |
file | AddSapConstraintMoverCreator.hh |
Mover that adds RotamerPSSMConstraint to pose. | |
file | AddSapMathConstraintMover.cc |
Mover that adds the SapMathConstraint to the pose. | |
file | AddSapMathConstraintMover.fwd.hh |
Mover that adds the SapMathConstraint to the pose. | |
file | AddSapMathConstraintMover.hh |
Mover that adds the SapMathConstraint to the pose. | |
file | AddSapMathConstraintMoverCreator.hh |
Mover that adds SapMathConstraint to pose. | |
file | AlignChainMover.cc |
file | AlignChainMover.fwd.hh |
file | AlignChainMover.hh |
switch the chain order | |
file | AlignChainMoverCreator.hh |
file | BackboneMover.cc |
Method definitions for SmallMover and ShearMover. | |
file | BackboneMover.fwd.hh |
BackboneMover forward declarations header. | |
file | BackboneMover.hh |
Declarations and simple accessor/mutator definitions for SmallMover and ShearMover. | |
file | BackboneMoverCreator.hh |
This class will create instances of protocols::moves::Movers SmallMover and ShearMover for the protocols::moves::MoverFactory. | |
file | BBConRotMover.cc |
file | BBConRotMover.fwd.hh |
file | BBConRotMover.hh |
file | BBDihedralSamplerMover.cc |
file | BBDihedralSamplerMover.fwd.hh |
Mover interface to BBDihedralSampler. | |
file | BBDihedralSamplerMover.hh |
Mover interface to BBDihedralSampler. | |
file | BBDihedralSamplerMoverCreator.hh |
Mover interface to BBDihedralSampler. | |
file | BBGaussianMover.cc |
file | BBGaussianMover.fwd.hh |
Gaussian Perturbation to backbone. | |
file | BBGaussianMover.hh |
file | BBGaussianMoverCreator.hh |
file | ChainSplitMover.cc |
file | ChainSplitMover.fwd.hh |
Forward declaration of ChainSplitMover which splits a pose into two chains at a given cutpoint. | |
file | ChainSplitMover.hh |
Declaration of ChainSplitMover which splits a pose into two chains at a given cutpoint. | |
file | ChangeAndResetFoldTreeMover.cc |
file | ChangeAndResetFoldTreeMover.fwd.hh |
file | ChangeAndResetFoldTreeMover.hh |
Basic Mover used for setting up atomic protocols. | |
file | ChangeAndResetFoldTreeMoverCreator.hh |
file | CombinePoseMover.cc |
file | CombinePoseMover.fwd.hh |
file | CombinePoseMover.hh |
file | ConcatenatePosesMover.cc |
links supplied Poses by their termini | |
file | ConcatenatePosesMover.fwd.hh |
links supplied Poses by their termini | |
file | ConcatenatePosesMover.hh |
links supplied Poses by their termini | |
file | ConcatenatePosesMoverCreator.hh |
links supplied Poses by their termini | |
file | ConstrainToIdealMover.cc |
Adds to your pose constraints suitable for idealization of bond lengths and angles. | |
file | ConstrainToIdealMover.fwd.hh |
ConstrainToIdealMover forward declarations header. | |
file | ConstrainToIdealMover.hh |
Adds to your pose constraints suitable for idealization of bond lengths and angles. | |
file | ContingentAcceptMover.cc |
file | ContingentAcceptMover.fwd.hh |
switch the chain order | |
file | ContingentAcceptMover.hh |
switch the chain order | |
file | ContingentAcceptMoverCreator.hh |
file | ConvertRealToVirtualMover.cc |
Mover for switching a residue type to all virtual. | |
file | ConvertRealToVirtualMover.fwd.hh |
Mover for switching a residue type to all virtual. | |
file | ConvertRealToVirtualMover.hh |
Mover for switching a residue type to all virtual. | |
file | ConvertRealToVirtualMoverCreator.hh |
Mover for switching a residue type to all virtual. | |
file | ConvertVirtualToRealMover.cc |
Mover for switching virtual residues back to real residues. | |
file | ConvertVirtualToRealMover.fwd.hh |
Mover for switching virtual residues back to real residues. | |
file | ConvertVirtualToRealMover.hh |
Mover for switching virtual residues back to real residues. | |
file | ConvertVirtualToRealMoverCreator.hh |
file | CopyDofMover.cc |
file | CopyDofMover.fwd.hh |
file | CopyDofMover.hh |
file | CopyRotamerMover.cc |
A mover to copy a rotamer (residue identity and conformation) from one position in a pose to another. | |
file | CopyRotamerMover.fwd.hh |
A mover to copy a rotamer (residue identity and conformation) from one position in a pose to another. | |
file | CopyRotamerMover.hh |
A mover to copy a rotamer (residue identity and conformation) from one position in a pose to another. | |
file | CopyRotamerMoverCreator.hh |
A mover to copy a rotamer (residue identity and conformation) from one position in a pose to another. | |
file | CoupledMover.cc |
implementation of CoupledMover class and functions | |
file | CoupledMover.fwd.hh |
file | CoupledMover.hh |
definition of CoupledMover class and functions | |
file | CoupledMoverCreator.hh |
This class will create instances of protocols::moves::Mover CoupledMover for the protocols::moves::MoverFactory. | |
file | CutChainMover.cc |
file | CutChainMover.fwd.hh |
file | CutChainMover.hh |
file | CutChainMoverCreator.hh |
file | CyclizationMover.cc |
file | CyclizationMover.fwd.hh |
file | CyclizationMover.hh |
Implimentation file for CyclizationMover. | |
file | DeclareBond.cc |
Add constraints to the current pose conformation. | |
file | DeclareBond.fwd.hh |
Defines owning pointers for DeclareBond mover class. | |
file | DeclareBond.hh |
Add constraints to the current pose conformation. | |
file | DeclareBondCreator.hh |
file | DEEROptimizeCoordsMover.cc |
file | DEEROptimizeCoordsMover.fwd.hh |
file | DEEROptimizeCoordsMover.hh |
file | DEEROptimizeCoordsMoverCreator.hh |
file | DeleteChainMover.cc |
file | DeleteChainMover.fwd.hh |
Add chain to an existing pose (as a new chain) | |
file | DeleteChainMover.hh |
Delete the chain specified by chain number. | |
file | DeleteChainMoverCreator.hh |
file | DeleteChainsMover.cc |
file | DeleteChainsMover.fwd.hh |
Forward declations for DeleteChainsMover. | |
file | DeleteChainsMover.hh |
Delete a chain from a pose. | |
file | DeleteChainsMoverCreator.hh |
Declaration of the protocols::moves::MoverCreator class for the DeleteChainsMover. | |
file | DisulfideInsertionMover.cc |
a mover that closes a receptor bound peptide by an added disulfide bond | |
file | DisulfideInsertionMover.fwd.hh |
Forward header file for DisulfideInsertionMover. | |
file | DisulfideInsertionMover.hh |
Header file for DisulfideInsertionMover. | |
file | DisulfideInsertionMoverCreator.cc |
Creator class for DisulfideInsertionMover. | |
file | DisulfideInsertionMoverCreator.fwd.hh |
Creator class for DisulfideInsertionMover. | |
file | DisulfideInsertionMoverCreator.hh |
Creator class for DisulfideInsertionMover. | |
file | DME_FilterMover.cc |
file | DME_FilterMover.hh |
file | DOFHistogramRecorder.cc |
file | DOFHistogramRecorder.fwd.hh |
Forward declarations for class DOFHistogramRecorder. | |
file | DOFHistogramRecorder.hh |
file | DumpPdb.cc |
file | DumpPdb.fwd.hh |
Forward header file for DumpPdb. | |
file | DumpPdb.hh |
file | DumpPdbCreator.hh |
file | DumpSingleResidueRotamers.cc |
Given a residue index, dump all of the rotamers to individual PDB files within 0-1 sd of the mean. | |
file | DumpSingleResidueRotamers.fwd.hh |
Given a residue index, dump all of the rotamers to individual PDB files within 0-1 sd of the mean. | |
file | DumpSingleResidueRotamers.hh |
Given a residue index, dump all of the rotamers to individual PDB files within 0-1 sd of the mean. | |
file | DumpSingleResidueRotamersCreator.hh |
Given a residue index, dump all of the rotamers to individual PDB files within 0-1 sd of the mean. | |
file | ExplicitWaterMover.cc |
add explicit water molecules to surface of biomolecule | |
file | ExplicitWaterMover.fwd.hh |
file | ExplicitWaterMover.hh |
file | ExplicitWaterMoverCreator.hh |
file | FavorSequenceProfile.cc |
Add a SequenceProfileConstraint to a pose. | |
file | FavorSequenceProfile.hh |
Add a SequenceProfileConstraint to a pose. | |
file | FavorSequenceProfileCreator.hh |
Declaration of the protocols::moves::MoverCreator class for the FavorSequenceProfile. | |
file | FavorSymmetricSequence.cc |
apply constraints to enforce a symmetric sequence | |
file | FavorSymmetricSequence.fwd.hh |
apply constraints to enforce a symmetric sequence | |
file | FavorSymmetricSequence.hh |
apply constraints to enforce a symmetric sequence | |
file | FavorSymmetricSequenceCreator.hh |
apply constraints to enforce a symmetric sequence | |
file | FoldTreeFromMotif.cc |
file | FoldTreeFromMotif.fwd.hh |
FoldTreeFromMotif forward declarations header. | |
file | FoldTreeFromMotif.hh |
file | FoldTreeFromMotifCreator.hh |
file | FragmentMover.cc |
file | FragmentMover.fwd.hh |
file | FragmentMover.hh |
file | GunnCost.cc |
file | GunnCost.hh |
file | LoadUnboundRotMover.cc |
LoadUnboundRotMover methods implemented. | |
file | LoadUnboundRotMover.fwd.hh |
file | LoadUnboundRotMover.hh |
file | LoadUnboundRotMoverCreator.hh |
file | MembraneTopology.cc |
file | MembraneTopology.fwd.hh |
file | MembraneTopology.hh |
file | MembraneTopologyCreator.hh |
file | MissingDensityToJumpMover.cc |
Implementation of mover that inserts a jump where there is gap in the pdb. This gap corresponds to missing density. | |
file | MissingDensityToJumpMover.fwd.hh |
Implementation of mover that inserts a jump where there is gap in the pdb. This gap corresponds to missing density. | |
file | MissingDensityToJumpMover.hh |
file | ModifyVariantTypeMover.cc |
Modify variant type to residues. | |
file | ModifyVariantTypeMover.fwd.hh |
file | ModifyVariantTypeMover.hh |
file | ModifyVariantTypeMoverCreator.hh |
file | MutateResidue.cc |
file | MutateResidue.fwd.hh |
file | MutateResidue.hh |
file | MutateResidueCreator.hh |
file | PDBReloadMover.cc |
file | PDBReloadMover.fwd.hh |
PDBReloadMover forward declarations header. | |
file | PDBReloadMover.hh |
file | PDBReloadMoverCreator.hh |
file | PeriodicBoxMover.cc |
Mover for running liquid simulation (or related other) | |
file | PeriodicBoxMover.fwd.hh |
file | PeriodicBoxMover.hh |
Mover for running liquid simulation (and related others) | |
file | PeriodicBoxMoverCreator.hh |
file | PoseFromPoseResourceMover.cc |
Mover that shuttles a Pose from a PoseResource into the DataMap when its parse_my_tag method is invoked. | |
file | PoseFromPoseResourceMover.fwd.hh |
Mover that shuttles a Pose from a PoseResource into the DataMap when its parse_my_tag method is invoked. | |
file | PoseFromPoseResourceMover.hh |
Mover that shuttles a Pose from a PoseResource into the DataMap when its parse_my_tag method is invoked. | |
file | PoseFromPoseResourceMoverCreator.hh |
Mover that shuttles a Pose from a PoseResource into the DataMap when its parse_my_tag method is invoked. | |
file | ProlineFixMover.cc |
file | ProlineFixMover.fwd.hh |
file | ProlineFixMover.hh |
file | PSSM2BfactorMover.cc |
file | PSSM2BfactorMover.fwd.hh |
switch the chain order | |
file | PSSM2BfactorMover.hh |
file | PSSM2BfactorMoverCreator.hh |
file | RandomOmegaFlipMover.cc |
file | RandomOmegaFlipMover.fwd.hh |
file | RandomOmegaFlipMover.hh |
file | RandomOmegaFlipMoverCreator.hh |
This class will create instances of RandomOmegaFlipMover for the MoverFactory. | |
file | RandomTorsionMover.cc |
file | RandomTorsionMover.fwd.hh |
file | RandomTorsionMover.hh |
file | RandomTorsionMoverCreator.hh |
This class will create instances of RandomTorsionMover for the MoverFactory. | |
file | ReportEffectivePKA.cc |
file | ReportEffectivePKA.hh |
file | ReportEffectivePKACreator.hh |
This class will create instances of Mover ReportEffectivePKA for the MoverFactory. | |
file | ReportXYZ.cc |
file | ReportXYZ.fwd.hh |
file | ReportXYZ.hh |
adds the x,y,z of a selected residue to the score function | |
file | ReportXYZCreator.hh |
file | RepulsiveOnlyMover.cc |
calculate repulsive energy only for certain residues | |
file | RepulsiveOnlyMover.fwd.hh |
file | RepulsiveOnlyMover.hh |
file | ResetFoldTree.cc |
file | ResetFoldTree.fwd.hh |
eliminates the fold tree | |
file | ResetFoldTree.hh |
wipes out a fold tree making the first residue 0 and the last residue the length of the protein | |
file | ResetFoldTreeCreator.hh |
file | ResetFullModelInfoMover.cc |
Ensure synchronized full model info. | |
file | ResetFullModelInfoMover.fwd.hh |
Ensure synchronized full model info. | |
file | ResetFullModelInfoMover.hh |
Ensure synchronized full model info. | |
file | ResetFullModelInfoMoverCreator.hh |
Ensure synchronized full model info. | |
file | ResTypeFragmentMover.cc |
file | ResTypeFragmentMover.fwd.hh |
file | ResTypeFragmentMover.hh |
file | ReturnSidechainMover.cc |
ReturnSidechainMover methods implemented. | |
file | ReturnSidechainMover.fwd.hh |
ReturnSidechainMover forward declarations header. | |
file | ReturnSidechainMover.hh |
protocols::moves::Mover to "return" proper sidechains to a pose that was temporarily in centroid mode (can be used for any sidechain copying) | |
file | RingConformationMover.cc |
Method definitions for RingConformationMover. | |
file | RingConformationMover.fwd.hh |
Forward declarations for RingConformationMover. | |
file | RingConformationMover.hh |
Declarations and simple accessor/mutator definitions for RingConformationMover. | |
file | RingConformationMoverCreator.hh |
Method declarations for RingConformationMoverCreator. | |
file | SampleSequenceFromProbabilities.cc |
A class to sample sequences from a PerResidueProbabilitiesMetric and thread them onto the pose. | |
file | SampleSequenceFromProbabilities.fwd.hh |
A class to sample sequences from a PerResidueProbabilitiesMetric and thread them onto the pose. | |
file | SampleSequenceFromProbabilities.hh |
A class to sample sequences from a PerResidueProbabilitiesMetric and thread them onto the pose. | |
file | SampleSequenceFromProbabilitiesCreator.hh |
A class to sample sequences from a PerResidueProbabilitiesMetric and thread them onto the pose. | |
file | SaveProbabilitiesMetricMover.cc |
A class to save a PerResidueProbabilitiesMetric to a weight file. | |
file | SaveProbabilitiesMetricMover.fwd.hh |
A class to save a PerResidueProbabilitiesMetric to a weight file. | |
file | SaveProbabilitiesMetricMover.hh |
A class to save a PerResidueProbabilitiesMetric to a weight file. | |
file | SaveProbabilitiesMetricMoverCreator.hh |
A class to save a PerResidueProbabilitiesMetric to a weight file. | |
file | SaveSequenceToCommentsMover.cc |
Remove constraints from the current pose conformation. | |
file | SaveSequenceToCommentsMover.fwd.hh |
file | SaveSequenceToCommentsMover.hh |
Add constraints to the current pose conformation. | |
file | SaveSequenceToCommentsMoverCreator.hh |
Declaration of the MoverCreator class for the SaveSequenceToCommentsMover. | |
file | ScoreMover.cc |
Applies a ScoreFunction to a Pose. Also has CASP and loop modeling features. | |
file | ScoreMover.fwd.hh |
ScoreMover forward declarations header. | |
file | ScoreMover.hh |
file | ScoreMoverCreator.hh |
file | SequenceProfileMover.cc |
moverization of code that was embedded in the parser | |
file | SequenceProfileMover.fwd.hh |
file | SequenceProfileMover.hh |
BS mover to get around a stupid "mover" that was embedded in the parser. | |
file | SequenceProfileMoverCreator.hh |
file | SetTorsion.cc |
file | SetTorsion.fwd.hh |
file | SetTorsion.hh |
Sets the value of a desired torsion. Header files for the mover. | |
file | SetTorsionCreator.hh |
file | SetupMetalsMover.cc |
file | SetupMetalsMover.fwd.hh |
SetupMetalsMover forward declarations header. | |
file | SetupMetalsMover.hh |
class definition for SetupMetalsMover | |
file | SetupMetalsMoverCreator.hh |
file | ShakeStructureMover.cc |
file | ShakeStructureMover.fwd.hh |
file | ShakeStructureMover.hh |
file | ShortBackrubMover.cc |
implementation of ShortBackrubMover class and functions | |
file | ShortBackrubMover.fwd.hh |
file | ShortBackrubMover.hh |
definition of ShortBackrubMover class and functions | |
file | ShortBackrubMoverCreator.hh |
This class will create instances of protocols::moves::Mover ShortBackrubMover for the protocols::moves::MoverFactory. | |
file | SimpleThreadingMover.cc |
Very Simple class for threading a regional sequence onto a structure. | |
file | SimpleThreadingMover.fwd.hh |
file | SimpleThreadingMover.hh |
file | SimpleThreadingMoverCreator.hh |
file | SixDoFGridDockMover.cc |
Class for enumerating docked orientations (3 translations and 3 rotations) between two chains. | |
file | SixDoFGridDockMover.fwd.hh |
Class for enumerating docked orientations (3 translations and 3 rotations) between two chains. | |
file | SixDoFGridDockMover.hh |
Class for enumerating docked orientations (3 translations and 3 rotations) between two chains. | |
file | SixDoFGridDockMoverCreator.hh |
Class for enumerating docked orientations (3 translations and 3 rotations) between two chains. | |
file | SmoothFragmentMover.cc |
file | SmoothFragmentMover.fwd.hh |
file | SmoothFragmentMover.hh |
file | StorePoseSnapshot.cc |
Stores current residue indices in the pose as a ReferencePose. As residues are added or subtracted, this permits the user to set up movers based on the current residue indices rather than the modified indices of a future state. | |
file | StorePoseSnapshot.fwd.hh |
Owning pointers and whatnot for the StorePoseSnapshot mover class. | |
file | StorePoseSnapshot.hh |
Stores current residue indices in the pose as a ReferencePose. As residues are added or subtracted, this permits the user to set up movers based on the current residue indices rather than the modified indices of a future state. Header files for the mover. | |
file | StorePoseSnapshotCreator.hh |
This class will create instances of the protocols::simple_moves::StorePoseSnapshot mover for the protocols::moves::MoverFactory. | |
file | StructProfileMover.cc |
file | StructProfileMover.fwd.hh |
Quickly generates a structure profile. | |
file | StructProfileMover.hh |
Quickly generates a structure profile. | |
file | StructProfileMoverCreator.hh |
file | SuperimposeMover.cc |
file | SuperimposeMover.fwd.hh |
SuperimposeMover forward declarations header. | |
file | SuperimposeMover.hh |
file | SuperimposeMoverCreator.hh |
file | SwitchChainOrderMover.cc |
file | SwitchChainOrderMover.fwd.hh |
switch the chain order | |
file | SwitchChainOrderMover.hh |
switch the chain order | |
file | SwitchChainOrderMoverCreator.hh |
file | SwitchResidueTypeSetMover.cc |
switch between residue type sets (e.g. centroid and all atom) | |
file | SwitchResidueTypeSetMover.fwd.hh |
switch between residue type sets (e.g. centroid and all atom) | |
file | SwitchResidueTypeSetMover.hh |
switch between residue type sets (e.g. centroid and all atom) | |
file | SwitchResidueTypeSetMoverCreator.hh |
file | SymmetricFragmentMover.cc |
file | SymmetricFragmentMover.fwd.hh |
file | SymmetricFragmentMover.hh |
file | TailsScoreMover.cc |
file | TailsScoreMover.hh |
file | TorsionDOFMover.cc |
TorsionDOFMover methods implemented. | |
file | TorsionDOFMover.fwd.hh |
TorsionDOFMover forward declarations header. | |
file | TorsionDOFMover.hh |
TorsionDOFMover header. | |
file | TorsionSetMover.cc |
file | TorsionSetMover.fwd.hh |
file | TorsionSetMover.hh |
file | Tumble.cc |
Add constraints to the current pose conformation. | |
file | Tumble.hh |
Declaration of the MoverCreator class for the Tumble. | |
file | TumbleCreator.hh |
file | UniformPositionMover.cc |
file | UniformPositionMover.fwd.hh |
Apply a uniform (deterministic move) to a given position. | |
file | UniformPositionMover.hh |
Apply a uniform (deterministic move) to a given position. | |
file | VirtualRootMover.cc |
Manipulate virtual roots on poses. This is a seperate mover mainly to be RosettaScriptable. | |
file | VirtualRootMover.fwd.hh |
VirtualRootMover forward declarations header. | |
file | VirtualRootMover.hh |
Manipulate virtual roots on poses. | |
file | VirtualRootMoverCreator.hh |
file | WobbleMover.cc |
file | WobbleMover.hh |
file | WriteFiltersToPose.cc |
Writes all filter results to the pose file. | |
file | WriteFiltersToPose.fwd.hh |
Writes the results from all filters to the pose. | |
file | WriteFiltersToPose.hh |
Writes all filter results to the pose file. | |
file | WriteFiltersToPoseCreator.hh |
This class will create instances of Mover WriteFiltersToPose for the MoverFactory. | |
file | WriteSSEMover.cc |
Writes SSE assignation from DSSP or prediction from PSIPRED as REMARK. | |
file | WriteSSEMover.fwd.hh |
Writes SSE assignation from DSSP or prediction from PSIPRED as REMARK. | |
file | WriteSSEMover.hh |
Writes SSE assignation from DSSP or prediction from PSIPRED as REMARK. | |
file | WriteSSEMoverCreator.hh |
Writes SSE assignation from DSSP or prediction from PSIPRED as REMARK. | |