Directory dependency graph for motifs:
Files | |
| file | BuildPosition.cc |
| Position where motifs are built in MotifSearch. | |
| file | BuildPosition.fwd.hh |
| Forward declaration for position where motifs are built in MotifSearch. | |
| file | BuildPosition.hh |
| Class declaration for position where motifs are built in MotifSearch. | |
| file | IdentifyLigandMotifs.cc |
| .cc fils for IdentifyLigandMotifs protocol. Protocol object reads in a pdb file(s) and outputs motifs for protein-ligand interactions in .pdb and .motifs format. App originally written by mdsmith, optimized and converted to protocol by Ari Ginsparg. | |
| file | IdentifyLigandMotifs.fwd.hh |
| .fwd.hh fils for IdentifyLigandMotifs protocol. Protocol object reads in a pdb file(s) and outputs motifs for protein-ligand interactions in .pdb and .motifs format. App originally written by mdsmith, optimized and converted to protocol by Ari Ginsparg. | |
| file | IdentifyLigandMotifs.hh |
| .hh fils for IdentifyLigandMotifs protocol. Protocol object reads in a pdb file(s) and outputs motifs for protein-ligand interactions in .pdb and .motifs format. App originally written by mdsmith, optimized and converted to protocol by Ari Ginsparg. | |
| file | IRCollection.cc |
| Implmentation of interaction motifs. | |
| file | IRCollection.fwd.hh |
| forward declaration for sets of interaction motifis between residues | |
| file | IRCollection.hh |
| class declaration for collections of inverse rotamers | |
| file | LigandDiscoverySearch.cc |
| aginsparg, ipatel, sthyme | |
| file | LigandDiscoverySearch.fwd.hh |
| file | LigandDiscoverySearch.hh |
| aginsparg, ipatel, sthyme; this script uses a target receptor, list of motifs, and input ligand(s) to attempt to fit ligands against the receptor against a specified residue index | |
| file | LigandMotifSearch.cc |
| Ligand motif searching protocol. | |
| file | LigandMotifSearch.fwd.hh |
| Forward declaration for interaction motif search protocol. | |
| file | LigandMotifSearch.hh |
| Class declaration for ligand motif searching protocol. | |
| file | Motif.cc |
| Implementation of interaction motifs. | |
| file | Motif.fwd.hh |
| forward declaration for interaction motif between residues | |
| file | Motif.hh |
| Header for interaction motif between residues. | |
| file | motif_utils.cc |
| Motif helper/conversion/io functions. | |
| file | motif_utils.hh |
| Header for motif helper/conversion/io functions. | |
| file | MotifDnaPacker.cc |
| file | MotifDnaPacker.fwd.hh |
| file | MotifDnaPacker.hh |
| file | MotifDnaPackerCreator.hh |
| This class will create instances of Mover MotifDnaPacker for the MoverFactory. | |
| file | MotifHit.cc |
| Class that holds information about a motif in the context of the search. | |
| file | MotifHit.fwd.hh |
| Forward declaration for class that holds information about a motif in the context of the search. | |
| file | MotifHit.hh |
| Class declaration for class that holds information about a motif in the context of the search. | |
| file | MotifLibrary.cc |
| Implementation of interaction motifs. | |
| file | MotifLibrary.fwd.hh |
| forward declaration for sets of interaction motifis between residues | |
| file | MotifLibrary.hh |
| class declaration for sets of interaction motifs between residues | |
| file | MotifSearch.cc |
| Motif searching protocol. | |
| file | MotifSearch.fwd.hh |
| Forward declaration for interaction motif search protocol. | |
| file | MotifSearch.hh |
| Class declaration for motif searching protocol. | |
| file | SingleMotif.cc |
| file | SingleMotif.fwd.hh |
| forward declaration for interaction motif between residues | |
| file | SingleMotif.hh |
| Header for interaction motif between residues. | |
