Directory dependency graph for drug_design:
Directories | |
| directory | bcl |
Files | |
| file | ApplyChemistryMover.cc |
| Apply a given Chemistry modifier to the ResidueType at a given position, then replace the ResidueType at that position. | |
| file | ApplyChemistryMover.fwd.hh |
| Apply a given Chemistry modifier to the ResidueType at a given position, then replace the ResidueType at that position. | |
| file | ApplyChemistryMover.hh |
| Apply a given Chemistry modifier to the ResidueType at a given position, then replace the ResidueType at that position. | |
| file | ApplyChemistryMoverCreator.hh |
| Apply a given Chemistry modifier to the ResidueType at a given position, then replace the ResidueType at that position. | |
| file | AtomExistsFilter.cc |
| file | AtomExistsFilter.fwd.hh |
| file | AtomExistsFilter.hh |
| definition of filter class AtomExistsFilter. | |
| file | AtomExistsFilterCreator.hh |
| FilterCreator for the AtomExistsFilter. | |
| file | ChemicalReaction.cc |
| A reaction object that keeps track of its fragment sets. | |
| file | ChemicalReaction.fwd.hh |
| file | ChemicalReaction.hh |
| A reaction object that keeps track of its fragment sets. | |
| file | ConformationSelectionToRDMol.cc |
| file | ConformationSelectionToRDMol.hh |
| file | DrugDesignMover.cc |
| MonteCarlo protocol to design drugs in a protein context. | |
| file | DrugDesignMover.fwd.hh |
| file | DrugDesignMover.hh |
| do MonteCarlo drug design in a protein context | |
| file | DrugDesignMoverCreator.hh |
| file | DrugPolishMover.cc |
| MonteCarlo protocol to design drugs in a protein context. | |
| file | DrugPolishMover.fwd.hh |
| file | DrugPolishMover.hh |
| Exhaustively enumerate reactions on a ligand. | |
| file | DrugPolishMoverCreator.hh |
| file | HeteroHeteroBondFilter.cc |
| file | HeteroHeteroBondFilter.fwd.hh |
| file | HeteroHeteroBondFilter.hh |
| definition of filter class HeteroHeteroBondFilter. | |
| file | HeteroHeteroBondFilterCreator.hh |
| FilterCreator for the HeteroHeteroBondFilter. | |
| file | LigandLocationFilter.cc |
| file | LigandLocationFilter.fwd.hh |
| file | LigandLocationFilter.hh |
| A filter to detect whether a ligand is inside a pocket. | |
| file | LigandLocationFilterCreator.hh |
| FilterCreator for the LigandLocationFilter. | |
| file | NChiFilter.cc |
| file | NChiFilter.fwd.hh |
| file | NChiFilter.hh |
| definition of filter class NChiFilter. | |
| file | NChiFilterCreator.hh |
| FilterCreator for the NChiFilter. | |
| file | RandomFragmentLigand.cc |
| file | RandomFragmentLigand.fwd.hh |
| file | RandomFragmentLigand.hh |
| Fragment a ligand to make it smaller. | |
| file | RandomFragmentLigandCreator.hh |
| Class for instantiating a RandomFragmentLigand. | |
| file | RDKitMetric.cc |
| A SimpleMetric which measures properties calcualted by RDKit on a ligand. | |
| file | RDKitMetric.fwd.hh |
| A SimpleMetric which measures properties calcualted by RDKit on a ligand. | |
| file | RDKitMetric.hh |
| A SimpleMetric which measures properties calcualted by RDKit on a ligand. | |
| file | RDKitMetricCreator.hh |
| A SimpleMetric which measures properties calcualted by RDKit on a ligand. | |
| file | RDKitMetricFilter.cc |
| file | RDKitMetricFilter.fwd.hh |
| file | RDKitMetricFilter.hh |
| definition of filter class RDKitMetricFilter. | |
| file | RDKitMetricFilterCreator.hh |
| FilterCreator for the RDKitMetricFilter. | |
| file | RDKitMetricsMover.cc |
| Add RDKit Metrics to a pose. | |
| file | RDKitMetricsMover.fwd.hh |
| file | RDKitMetricsMover.hh |
| Add RDKit metrics to a pose. | |
| file | RDKitMetricsMoverCreator.hh |
| file | ReactionBasedAnalogSampler.cc |
| file | ReactionBasedAnalogSampler.fwd.hh |
| file | ReactionBasedAnalogSampler.hh |
| Reaction-based and similarity guided analoging in a given chemical library. | |
| file | ReactionBasedAnalogSamplerCreator.hh |
| Class for instantiating a ReactionBasedAnalogSampler. | |
| file | ReactionChemistry.cc |
| file | ReactionChemistry.hh |
| apply RDKit's reaction-based fragment addition to a ResidueType | |
| file | ReactionFragment.cc |
| file | ReactionFragment.fwd.hh |
| file | ReactionFragment.hh |
| apply RDKit's reaction-based fragment addition to a ResidueType | |
| file | ReactionFragmentCreator.hh |
| Class for instantiating a ReactionFragment. | |
| file | ReactionGrow.cc |
| file | ReactionGrow.fwd.hh |
| file | ReactionGrow.hh |
| apply RDKit's reaction-based fragment addition to a ResidueType | |
| file | ReactionGrowCreator.hh |
| Class for instantiating a ReactionGrow. | |
| file | ReactionMultiTransform.cc |
| file | ReactionMultiTransform.fwd.hh |
| file | ReactionMultiTransform.hh |
| apply RDKit's reaction-based chemistry to transform a ResidueType | |
| file | ReactionMultiTransformCreator.hh |
| Class for instantiating a ReactionMultiTransform. | |
| file | SAScoreFilter.cc |
| A filter to calculate the Novartis Sythetic Accesibility score using RDKit. | |
| file | SAScoreFilter.fwd.hh |
| file | SAScoreFilter.hh |
| A filter which computes the Novartis SA_Score metric. | |
| file | SAScoreFilterCreator.hh |
| FilterCreator for the SAScoreFilter. | |
| file | SubstituentReplace.cc |
| file | SubstituentReplace.fwd.hh |
| file | SubstituentReplace.hh |
| use RDKit to replace a subsituent on a substructure in a ResidueType | |
| file | SubstituentReplaceCreator.hh |
| Class for instantiating a SubstituentReplace. | |
| file | substitution_support.cc |
| use RDKit to substitute items based on matched templates | |
| file | substitution_support.fwd.hh |
| file | substitution_support.hh |
| file | SubstructureReplace.cc |
| file | SubstructureReplace.fwd.hh |
| file | SubstructureReplace.hh |
| use RDKit to replace a substructure in a ResidueType | |
| file | SubstructureReplaceCreator.hh |
| Class for instantiating a SubstructureReplace. | |
| file | util.cc |
| Utilities for DrugDesign. | |
| file | util.hh |
| Utilities for DrugDesign. | |
