Directory dependency graph for docking:
Directories | |
| directory | membrane |
| directory | stateless |
Files | |
| file | ConformerSwitchMover.cc |
| code for the conformer switch mover in ensemble docking | |
| file | ConformerSwitchMover.fwd.hh |
| ConformerSwitchMover forward declarations header. | |
| file | ConformerSwitchMover.hh |
| file | ConformerSwitchMoverCreator.hh |
| file | DockFilters.cc |
| file | DockFilters.fwd.hh |
| file | DockFilters.hh |
| file | DockingEnsemble.cc |
| container class for ensemble docking information to be used with ConformerSwitchMover | |
| file | DockingEnsemble.fwd.hh |
| file | DockingEnsemble.hh |
| file | DockingEnsemblePrepackProtocol.cc |
| Prepacking of the bound structure before docking with ensembles. | |
| file | DockingEnsemblePrepackProtocol.fwd.hh |
| file | DockingEnsemblePrepackProtocol.hh |
| file | DockingHighRes.cc |
| file | DockingHighRes.fwd.hh |
| file | DockingHighRes.hh |
| file | DockingHighResFactory.cc |
| Factory for creating DockingHighRes objects. | |
| file | DockingHighResFactory.fwd.hh |
| Factory for creating DockingHighRes objects. | |
| file | DockingHighResFactory.hh |
| Factory for creating DockingHighRes objects. | |
| file | DockingHighResLegacy.cc |
| file | DockingHighResLegacy.fwd.hh |
| forward declarations for DockingHighResLegacy (high resolution docking protocol as it existed in mini before the GrayLab refactor) | |
| file | DockingHighResLegacy.hh |
| file | DockingHighResLegacyCreator.hh |
| Declaration of the MoverCreator class for DockingHighResLegacy. | |
| file | DockingInitialPerturbation.cc |
| initial position functions | |
| file | DockingInitialPerturbation.fwd.hh |
| file | DockingInitialPerturbation.hh |
| file | DockingInitialPerturbationCreator.hh |
| file | DockingLowRes.cc |
| file | DockingLowRes.fwd.hh |
| file | DockingLowRes.hh |
| file | DockingLowResEnsemble.cc |
| file | DockingLowResEnsemble.fwd.hh |
| file | DockingLowResEnsemble.hh |
| file | DockingPrepackProtocol.cc |
| Prepacking of the bound sturcture before docking. | |
| file | DockingPrepackProtocol.fwd.hh |
| file | DockingPrepackProtocol.hh |
| file | DockingPrepackProtocolCreator.hh |
| Declaration of the MoverCreator class for the DockingPrepackProtocol. | |
| file | DockingProtocol.cc |
| file | DockingProtocol.fwd.hh |
| file | DockingProtocol.hh |
| file | DockingProtocolCreator.hh |
| file | DockingSlideIntoContactCreator.hh |
| file | DockMCMCycle.cc |
| file | DockMCMCycle.fwd.hh |
| forward declarations for DockMCMCycle (high resolution min) docking | |
| file | DockMCMCycle.hh |
| file | DockMCMProtocol.cc |
| file | DockMCMProtocol.fwd.hh |
| forward declarations for DockMCMProtocol (high resolution min) docking | |
| file | DockMCMProtocol.hh |
| Declaration of the MoverCreator class for the DockMCMProtocol. | |
| file | DockMCMProtocolCreator.hh |
| file | DockMinMover.cc |
| file | DockMinMover.fwd.hh |
| forward declarations for DockMinMover (high resolution min) docking | |
| file | DockMinMover.hh |
| file | DockMinMoverCreator.hh |
| Declaration of the MoverCreator class for the DockMinMover. | |
| file | DockSetupMover.cc |
| file | DockSetupMover.fwd.hh |
| file | DockSetupMover.hh |
| allows low-resolution docking using simulated or parallel tempering | |
| file | DockSetupMoverCreator.hh |
| file | DockTaskFactory.cc |
| file | DockTaskFactory.fwd.hh |
| forward declarations for DockTaskFactory | |
| file | DockTaskFactory.hh |
| file | EllipsoidalRandomizationMover.cc |
| file | EllipsoidalRandomizationMover.fwd.hh |
| forward declarations for EllipsoidalRandomizationMover (docking initial placement mover) | |
| file | EllipsoidalRandomizationMover.hh |
| file | EnsureExclusivelySharedJumpMover.cc |
| Set up foldtree such that there exists a jump that builds all selected residues and does not build any unselected residues. | |
| file | EnsureExclusivelySharedJumpMover.fwd.hh |
| forward declarations for EnsureExclusivelySharedJumpMover | |
| file | EnsureExclusivelySharedJumpMover.hh |
| Set up foldtree such that there exists a jump that builds all selected residues and does not build any unselected residues. | |
| file | EnsureExclusivelySharedJumpMoverCreator.hh |
| Declaration of the MoverCreator class for the EnsureExclusivelySharedJumpMover. | |
| file | metrics.cc |
| file | metrics.hh |
| file | RigidBodyInfo.cc |
| file | RigidBodyInfo.fwd.hh |
| file | RigidBodyInfo.hh |
| file | SidechainMinMover.cc |
| file | SidechainMinMover.fwd.hh |
| file | SidechainMinMover.hh |
| file | TemperedDocking.cc |
| file | TemperedDocking.fwd.hh |
| file | TemperedDocking.hh |
| allows low-resolution docking using simulated or parallel tempering | |
| file | TemperedDockingCreator.hh |
| file | types.hh |
| Additionl types for Docking protocol. | |
| file | util.cc |
| file | util.hh |
