Directory dependency graph for toolbox:
Directories | |
| directory | match_enzdes_util |
| directory | pose_manipulation |
| directory | rigid_body |
| directory | rotamer_set_operations |
| directory | sample_around |
Files | |
| file | CalcInterNeighborGroup.cc |
| This is meant for finding interfaces between protein domains - like protein-protein interfaces but within a protein. It's more flexible than that, though. You define groups of residues within a protein (say, the N and C terminal domains). You then define which pairs of groups you are interested in. This calculator returns the union of the sets of residues at the interfaces between these domains/groups. This calculator contains a superset of the functionality of some of the other calculators, but is less efficient in simple cases. The pose does NOT have to have been scored. | |
| file | CalcInterNeighborGroup.fwd.hh |
| file | CalcInterNeighborGroup.hh |
| This calculator is meant for finding interfaces between protein domains - like protein-protein interfaces but within a protein. It's more flexible than that, though. You define groups of residues within a protein (say, the N and C terminal domains). You then define which pairs of groups you are interested in. This calculator returns the union of the sets of residues at the interfaces between these domains/groups. This calculator contains a superset of the functionality of some of the other calculators, but is less efficient in simple cases. The pose does NOT have to have been scored. | |
| file | Cluster.cc |
| file | Cluster.hh |
| file | Cluster.impl.hh |
| template implementation for clustering of silentstructs that are provided by iterators | |
| file | DecoySetEvaluation.cc |
| file | DecoySetEvaluation.fwd.hh |
| file | DecoySetEvaluation.hh |
| file | DecoySetEvaluation.impl.hh |
| file | EnergyLandscapeEvaluator.cc |
| Evaluates a set of score/rms points. | |
| file | EnergyLandscapeEvaluator.fwd.hh |
| Evaluates a set of score/rms points. | |
| file | EnergyLandscapeEvaluator.hh |
| Evaluates a set of score/rms points. | |
| file | IGEdgeReweighters.cc |
| file | IGEdgeReweighters.hh |
| file | InteratomicVarianceMatrix.cc |
| file | InteratomicVarianceMatrix.hh |
| file | KCluster.cc |
| file | KCluster.fwd.hh |
| file | KCluster.hh |
| Fast clustering algorithm for large silent file. | |
| file | NetworkAlgorithms.cc |
| calculate various network properties from poses | |
| file | NetworkAlgorithms.fwd.hh |
| FOrward header for class that analyzes properties of residue networks. | |
| file | NetworkAlgorithms.hh |
| Computes network properties of a pose. | |
| file | PyReturnValuePolicyTest.cc |
| file | PyReturnValuePolicyTest.hh |
| A few functions test how PyRosetta handle boost ReturnValuePolicy. | |
| file | SamplerPlusPlus.fwd.hh |
| Abstract Base Class for Sampler generator. | |
| file | SamplerPlusPlus.hh |
| Abstract Base Class for Sampler generator. | |
| file | SamplerPlusPlusType.hh |
| file | superimpose.cc |
| file | superimpose.hh |
