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| file | CrankshaftFlipMover.cc |
| | This mover performs a cyclic-aware crankshaft flip at a residue position.
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| file | CrankshaftFlipMover.fwd.hh |
| | This mover performs a cyclic-aware crankshaft flip at a residue position.
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| file | CrankshaftFlipMover.hh |
| | This mover performs a cyclic-aware crankshaft flip at a residue position.
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| file | CrankshaftFlipMoverCreator.hh |
| | This mover performs a cyclic-aware crankshaft flip at a residue position.
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| file | CreateAngleConstraint.cc |
| | Add angle constraints to the current pose conformation.
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| file | CreateAngleConstraint.fwd.hh |
| | Defines owning pointers for CreateAngleConstraint mover class.
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| file | CreateAngleConstraint.hh |
| | Add angle constraints to the current pose conformation.
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| file | CreateAngleConstraintCreator.hh |
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| file | CreateDistanceConstraint.cc |
| | Add distance constraints to the current pose conformation.
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| file | CreateDistanceConstraint.fwd.hh |
| | Defines owning pointers for CreateDistanceConstraint mover class.
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| file | CreateDistanceConstraint.hh |
| | Add distance constraints to the current pose conformation.
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| file | CreateDistanceConstraintCreator.hh |
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| file | CreateTorsionConstraint.cc |
| | Add torsion constraints to the current pose conformation.
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| file | CreateTorsionConstraint.fwd.hh |
| | Defines owning pointers for CreateTorsionConstraint mover class.
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| file | CreateTorsionConstraint.hh |
| | Add torsion constraints to the current pose conformation.
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| file | CreateTorsionConstraintCreator.hh |
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| file | CrosslinkerMover.cc |
| | This mover links two or more residues with a (possibly symmetric) cross-linker. It adds the crosslinker, sets up constraints, optionally packs and energy-mimizes it into place (packing/minimizing only the crosslinker and the side-chains to which it connects), and then optionally relaxes the whole structure.
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| file | CrosslinkerMover.fwd.hh |
| | This mover links three cysteine residues with a three-way cross-linker. It adds the crosslinker, sets up constraints, optionally packs and energy-mimizes it into place (packing/minimizing only the crosslinker and the side-chains to which it connects), andthen optionally relaxes the whole structure.
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| file | CrosslinkerMover.hh |
| | This mover links two or more residues with a (possibly symmetric) cross-linker. It adds the crosslinker, sets up constraints, optionally packs and energy-mimizes it into place (packing/minimizing only the crosslinker and the side-chains to which it connects), and then optionally relaxes the whole structure.
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| file | CrosslinkerMoverCreator.hh |
| | This mover links three cysteine residues with a three-way cross-linker. It adds the crosslinker, sets up constraints, optionally packs and energy-mimizes it into place (packing/minimizing only the crosslinker and the side-chains to which it connects), andthen optionally relaxes the whole structure.
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| file | CycpepRigidBodyPermutationMover.cc |
| | Implementations of functions for a mover that takes a cyclic peptide and alters its position (rigid-body transform), superimposing it on a cyclic permutation or reverse cyclic permutation of itself.
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| file | CycpepRigidBodyPermutationMover.fwd.hh |
| | Forward declarations for a mover that takes a cyclic peptide and alters its position (rigid-body transform), superimposing it on a cyclic permutation or reverse cyclic permutation of itself.
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| file | CycpepRigidBodyPermutationMover.hh |
| | Headers for a mover that takes a cyclic peptide and alters its position (rigid-body transform), superimposing it on a cyclic permutation or reverse cyclic permutation of itself.
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| file | CycpepRigidBodyPermutationMoverCreator.hh |
| | Creator for a mover that takes a cyclic peptide and alters its position (rigid-body transform), superimposing it on a cyclic permutation or reverse cyclic permutation of itself.
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| file | CycpepSymmetryFilter.cc |
| | A filter that examines a cyclic peptide's structure and returns TRUE if and only if it has a desired backbone symmetry.
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| file | CycpepSymmetryFilter.fwd.hh |
| | A filter that examines a cyclic peptide's structure and returns TRUE if and only if it has a desired backbone symmetry.
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| file | CycpepSymmetryFilter.hh |
| | A filter that examines a cyclic peptide's structure and returns TRUE if and only if it has a desired backbone symmetry.
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| file | CycpepSymmetryFilterCreator.hh |
| | A filter that examines a cyclic peptide's structure and returns TRUE if and only if it has a desired backbone symmetry.
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| file | FlipChiralityMover.cc |
| | Add constraints to the current pose conformation.
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| file | FlipChiralityMover.fwd.hh |
| | Defines owning pointers for FlipChiralityMover mover class.
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| file | FlipChiralityMover.hh |
| | Mirrors a pose.
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| file | FlipChiralityMoverCreator.hh |
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| file | OversaturatedHbondAcceptorFilter.cc |
| | This filter flags poses containing more than two hydrogen bonds to an oxygen atom, a common pathology that results from Rosetta's pairwise-decomposible scorefunction, which can't penalize excessive hydrogen bonds.
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| file | OversaturatedHbondAcceptorFilter.fwd.hh |
| | Forward declarations and owning pointers for the OversaturatedHbondAcceptorFilter.
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| file | OversaturatedHbondAcceptorFilter.hh |
| | Headers for the OversaturatedHbondAcceptorFilter. This filter flags poses containing more than two hydrogen bonds to an oxygen atom, a common pathology that results from Rosetta's pairwise-decomposible scorefunction, which can't penalize excessive hydrogen bonds.
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| file | OversaturatedHbondAcceptorFilterCreator.hh |
| | Creators for the OversaturatedHbondAcceptorFilter. This filter flags poses containing more than two hydrogen bonds to an oxygen atom, a common pathology that results from Rosetta's pairwise-decomposible scorefunction, which can't penalize excessive hydrogen bonds.
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| file | PeptideCyclizeMover.cc |
| | Adds all the required constraints and bonds to cyclize a pose.
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| file | PeptideCyclizeMover.fwd.hh |
| | Defines owning pointers for PeptideCyclizeMover mover class.
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| file | PeptideCyclizeMover.hh |
| | PeptideCyclizeMover a pose, by default with a peptide bond to N and C terminal and constraints.
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| file | PeptideCyclizeMoverCreator.hh |
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| file | PeptideInternalHbondsFilter.cc |
| | A filter that thinly wraps the PeptideInternalHbondsMetric.
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| file | PeptideInternalHbondsFilter.fwd.hh |
| | A filter that thinly wraps the PeptideInternalHbondsMetric.
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| file | PeptideInternalHbondsFilter.hh |
| | A filter that thinly wraps the PeptideInternalHbondsMetric.
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| file | PeptideInternalHbondsFilterCreator.hh |
| | A filter that thinly wraps the PeptideInternalHbondsMetric.
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| file | PeptideInternalHbondsMetric.cc |
| | A simple metric for measuring the hydrogen bonds within a peptide backbone, ignoring hydrogen bonds to other parts of a pose. Note that this metric does not count intra-residue hydrogen bonds.
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| file | PeptideInternalHbondsMetric.fwd.hh |
| | A simple metric for measuring the backbone hydrogen bonds within a peptide backbone, ignoring hydrogen bonds to other parts of a pose.
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| file | PeptideInternalHbondsMetric.hh |
| | A simple metric for measuring the hydrogen bonds within a peptide backbone, ignoring hydrogen bonds to other parts of a pose. Note that this metric does not count intra-residue hydrogen bonds.
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| file | PeptideInternalHbondsMetricCreator.hh |
| | A simple metric for measuring the hydrogen bonds within a peptide backbone, ignoring hydrogen bonds to other parts of a pose.
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| file | PeptideStubMover.cc |
| | The PeptideStubMover prepends, appends, or inserts residues into an existing pose, or builds a new polymeric chain.
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| file | PeptideStubMover.fwd.hh |
| | Defines owning pointers for PeptideStubMover mover class.
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| file | PeptideStubMover.hh |
| | The PeptideStubMover prepends, appends, or inserts residues into an existing pose, or builds a new polymeric chain.
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| file | PeptideStubMoverCreator.hh |
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| file | RamaMutationSelector.cc |
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| file | RamaMutationSelector.fwd.hh |
| | Selects positions that would have a rama_prepro score below a given threshold IF mutated to a given residue type.
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| file | RamaMutationSelector.hh |
| | Selects positions that would have a rama_prepro score below a given threshold IF mutated to a given residue type.
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| file | RamaMutationSelectorCreator.hh |
| | Selects positions that would have a rama_prepro score below a given threshold IF mutated to a given residue type.
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| file | SymmetricCycpepAlign.cc |
| | Given a quasi-symmetric cyclic peptide, this mover aligns the peptide so that the cyclic symmetry axis lies along the Z-axis and the centre of mass is at the origin. It then optionally removes all but one symmetry repeat, so that true symmetry may be set up with the SetupForSymmetry mover.
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| file | SymmetricCycpepAlign.fwd.hh |
| | Given a quasi-symmetric cyclic peptide, this mover aligns the peptide so that the cyclic symmetry axis lies along the Z-axis and the centre of mass is at the origin. It then optionally removes all but one symmetry repeat, so that true symmetry may be set up with the SetupForSymmetry mover.
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| file | SymmetricCycpepAlign.hh |
| | Given a quasi-symmetric cyclic peptide, this mover aligns the peptide so that the cyclic symmetry axis lies along the Z-axis and the centre of mass is at the origin. It then optionally removes all but one symmetry repeat, so that true symmetry may be set up with the SetupForSymmetry mover.
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| file | SymmetricCycpepAlignCreator.hh |
| | Given a quasi-symmetric cyclic peptide, this mover aligns the peptide so that the cyclic symmetry axis lies along the Z-axis and the centre of mass is at the origin. It then optionally removes all but one symmetry repeat, so that true symmetry may be set up with the SetupForSymmetry mover.
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| file | TryDisulfPermutations.cc |
| | Tries all permutations of disulfide bonds between disulfide-forming residues in a pose.
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| file | TryDisulfPermutations.fwd.hh |
| | Defines owning pointers for TryDisulfPermutations mover class.
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| file | TryDisulfPermutations.hh |
| | Headers for TryDisulfPermutations.cc. Tries all permutations of disulfide bonds between disulfide-forming residues in a pose.
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| file | TryDisulfPermutationsCreator.hh |
| | This class will create instances of Mover TryDisulfPermutations for the MoverFactory.
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