PeptideStubMover.hh File Reference

The PeptideStubMover prepends, appends, or inserts residues into an existing pose, or builds a new polymeric chain. More...

#include <protocols/moves/Mover.hh>
#include <protocols/cyclic_peptide/PeptideStubMover.fwd.hh>
#include <core/chemical/ResidueTypeSet.fwd.hh>
#include <core/conformation/Residue.fwd.hh>
#include <core/select/residue_selector/ResidueSelector.fwd.hh>
#include <utility/vector1.hh>

Classes
class	protocols::cyclic_peptide::PeptideStubMover

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::cyclic_peptide

Typedefs
using	protocols::cyclic_peptide::FirstResidAdded = core::Size
	This type alias is meant to clarify certain return types. More...

Enumerations
enum	protocols::cyclic_peptide::PSM_StubMode { protocols::cyclic_peptide::PSM_append , protocols::cyclic_peptide::PSM_prepend , protocols::cyclic_peptide::PSM_insert }

Variables
constexpr char	protocols::cyclic_peptide::DEFAULT_LABEL [] = "PEPTIDE_STUB_EXTENSION"

Detailed Description

The PeptideStubMover prepends, appends, or inserts residues into an existing pose, or builds a new polymeric chain.

Author

Yifan Song @modified Vikram K. Mulligan (vmull.nosp@m.igan.nosp@m.@flat.nosp@m.iron.nosp@m.insti.nosp@m.tute.nosp@m..org): Added support for stripping N-acetylation and C-methylamidation when appending residues, preserving phi and the previous omega in the first case and psi and the following omega in the second. @modified Jack Maguire: breaking apply() into smaller methods