|
| file | BestTotalScoreSelector.cc |
| |
| file | BestTotalScoreSelector.fwd.hh |
| |
| file | BestTotalScoreSelector.hh |
| | provides a selector that picks best fragments based on their total score
|
| |
| file | BoundedCollector.fwd.hh |
| |
| file | BoundedCollector.hh |
| |
| file | CandidatesCollector.fwd.hh |
| | Forward declaration for CandidatesCollector.
|
| |
| file | CandidatesCollector.hh |
| | Pure virtual base class for a container holding fragment candidates.
|
| |
| file | CommonFragmentComparators.fwd.hh |
| | provides a few ways to compare fragment candidates (forward definitions)
|
| |
| file | CommonFragmentComparators.hh |
| | provides a few ways to compare fragment candidates
|
| |
| file | CompositeFragmentSelector.cc |
| | provides a selector that picks best fragments based on their total score
|
| |
| file | CompositeFragmentSelector.hh |
| | provides a selector that picks best fragments based on their total score
|
| |
| file | Contact.fwd.hh |
| |
| file | Contact.hh |
| | A contact.
|
| |
| file | ContactCounts.fwd.hh |
| |
| file | ContactCounts.hh |
| | Contact counts.
|
| |
| file | ContactTypes.cc |
| | fragment picker contact types
|
| |
| file | ContactTypes.hh |
| | fragment picker type declarations
|
| |
| file | CS2ndShift.cc |
| |
| file | CS2ndShift.hh |
| |
| file | CSTalosIO.cc |
| |
| file | CSTalosIO.fwd.hh |
| | forward declaration for a CSTalosIO
|
| |
| file | CSTalosIO.hh |
| | Class that converts Talos object into secondary shifts list.
|
| |
| file | CustomScoreSelector.cc |
| |
| file | CustomScoreSelector.fwd.hh |
| |
| file | CustomScoreSelector.hh |
| | provides a selector that picks best fragments based on their total score
|
| |
| file | DiversifyCrmsdByClustering.cc |
| |
| file | DiversifyCrmsdByClustering.hh |
| | provides a selector that picks fragments diversified by crmsd (by means of hierarchical clustering)
|
| |
| file | DiversifyCrmsdSelector.cc |
| |
| file | DiversifyCrmsdSelector.hh |
| | provides a selector that picks best fragments based on their total score
|
| |
| file | DiversifyDihedralsSelector.cc |
| |
| file | DiversifyDihedralsSelector.hh |
| | provides a selector that picks best fragments based on their total score
|
| |
| file | Faraggi_SA.cc |
| | Faraggi maximum SA values from Faraggi et al. Proteins 2008.
|
| |
| file | Faraggi_SA.hh |
| | Faraggi maximum SA values from Faraggi et al. Proteins 2008.
|
| |
| file | FragmentCandidate.cc |
| |
| file | FragmentCandidate.fwd.hh |
| |
| file | FragmentCandidate.hh |
| | Something that might become a fragment if its scores will be good enough.
|
| |
| file | FragmentComparatorBase.fwd.hh |
| |
| file | FragmentComparatorBase.hh |
| | defines a base class for all fragment comparators
|
| |
| file | FragmentPicker.cc |
| | Fragment picker - the core part of picking machinery.
|
| |
| file | FragmentPicker.fwd.hh |
| | Fragment picker - forward declaration.
|
| |
| file | FragmentPicker.hh |
| | Fragment picker - the core part of picking machinery.
|
| |
| file | FragmentScoreFilter.cc |
| | This filter analyzes fragment quality. How it does so is highly customizeable, but it is reccommended that you average the RMSD of all 200 fragments picked at every position. This is also the default behavior. It requires paths to external programs like SPARKS-X and blast-pgp, depending on your method of fragment picking.
|
| |
| file | FragmentScoreFilter.fwd.hh |
| |
| file | FragmentScoreFilter.hh |
| |
| file | FragmentScoreFilterCreator.hh |
| | FilterCreators for the FragmentScoreFilterCreator.
|
| |
| file | FragmentSelectingRule.fwd.hh |
| |
| file | FragmentSelectingRule.hh |
| | provides a selector that picks best fragments based on their total score
|
| |
| file | GrabAllCollector.hh |
| |
| file | JCouplingIO.cc |
| |
| file | JCouplingIO.hh |
| |
| file | LAMBEGO_IO.cc |
| |
| file | LAMBEGO_IO.hh |
| | reader for a probability distribution over A,B,E,G,O torsion bins.
|
| |
| file | LazySortedVector1.hh |
| |
| file | PdbIdChunkFilter.cc |
| |
| file | PdbIdChunkFilter.fwd.hh |
| |
| file | PdbIdChunkFilter.hh |
| |
| file | PhiPsiTalosIO.cc |
| |
| file | PhiPsiTalosIO.fwd.hh |
| | forward declaration for a PhiPsiTalosIO
|
| |
| file | PhiPsiTalosIO.hh |
| | Class that reads and writes Phi-Psi in TALOS format.
|
| |
| file | SidechainContactDistCutoff.cc |
| | Defines sidechain contact distance cutoffs.
|
| |
| file | SidechainContactDistCutoff.fwd.hh |
| |
| file | SidechainContactDistCutoff.hh |
| | Defines sidechain contact distance cutoffs.
|
| |
| file | TorsionBinIO.cc |
| |
| file | TorsionBinIO.hh |
| | reader for a probability distribution over A,B,E,G,O torsion bins.
|
| |
| file | VallChunk.cc |
| | a contiguous chunk of residues taken from a vall.
|
| |
| file | VallChunk.fwd.hh |
| | forward declaration for VallChunk
|
| |
| file | VallChunk.hh |
| | a contiguous chunk of residues taken from a vall.
|
| |
| file | VallChunkFilter.fwd.hh |
| | forward declaration for VallChunkFilter
|
| |
| file | VallChunkFilter.hh |
| | defines two basic chunk filters based on pdb id
|
| |
| file | VallProvider.cc |
| | reads a vall library and serves the data in chunks
|
| |
| file | VallProvider.fwd.hh |
| | forward declaration for VallProvider
|
| |
| file | VallProvider.hh |
| | reads a vall library and serves the data in chunks
|
| |
| file | VallResidue.cc |
| | class for managing a line of the Vall fragment library
|
| |
| file | VallResidue.fwd.hh |
| | forward declaration for core::fragment::picking::vall:VallResidue
|
| |
| file | VallResidue.hh |
| | class for managing a line of the Vall fragment library
|
| |
