FragmentCandidate.hh File Reference

Something that might become a fragment if its scores will be good enough. More...

#include <core/types.hh>
#include <protocols/frag_picker/FragmentCandidate.fwd.hh>
#include <protocols/frag_picker/VallChunk.hh>
#include <protocols/frag_picker/scores/FragmentScoreMap.hh>
#include <protocols/frag_picker/scores/FragmentScoreManager.fwd.hh>
#include <core/fragment/FragData.hh>
#include <core/io/silent/SilentFileData.fwd.hh>
#include <utility/VirtualBase.hh>
#include <core/fragment/BBTorsionSRFD.hh>
#include <utility/vector1.hh>
#include <ostream>

Classes
class	protocols::frag_picker::FragmentCandidate
	Vector candidate says which X-mer from vall fits to a query sequence. More...

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::frag_picker

Functions
utility::vector1< FragmentCandidateOP >	protocols::frag_picker::read_fragment_candidates (std::string file_name, VallProviderOP chunk_owner, core::Size max_nfrags_per_pos)
std::ostream &	protocols::frag_picker::operator<< (std::ostream &out, FragmentCandidate const &fr)
std::ostream &	protocols::frag_picker::operator<< (std::ostream &out, std::pair< FragmentCandidateOP, scores::FragmentScoreMapOP > const &pair)

Detailed Description

Something that might become a fragment if its scores will be good enough.

Author

Dominik Gront (dgron.nosp@m.t@ch.nosp@m.em.uw.nosp@m..edu.nosp@m..pl)