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| static basic::Tracer | TR ("core.io.pdb.pdb_writer") |
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| bool | core::io::pdb::dump_pdb (core::pose::Pose const &pose, std::string const &file_name) |
| | Writes <pose> to a PDB file, returns false if an error occurs Use default StructFileRepOptions. More...
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| bool | core::io::pdb::dump_pdb (core::pose::Pose const &pose, std::string const &file_name, core::io::StructFileRepOptionsCOP options) |
| | Writes <pose> to a PDB file, returns false if an error occurs. More...
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| void | core::io::pdb::dump_pdb (core::pose::Pose const &pose, std::ostream &out, std::string const &out_fname) |
| | Writes <pose> to a given stream in PDB file format Use default StructFileRepOptions. More...
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| void | core::io::pdb::dump_pdb (core::pose::Pose const &pose, std::ostream &out, core::io::StructFileRepOptionsCOP options, std::string const &out_fname="") |
| | Writes <pose> to a given stream in PDB file format If a non-empty string is given for the out_fname variable, then the Pose energy table at the bottom of the PDB will be labeled with this string. More...
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| void | core::io::pdb::dump_pdb (pose::Pose const &pose, std::ostream &out, id::AtomID_Mask const &mask, core::io::StructFileRepOptionsCOP options) |
| | This version takes an AtomID mask. More...
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| void | core::io::pdb::dump_pdb (core::pose::Pose const &pose, std::ostream &out, utility::vector1< core::Size > const &residue_indices, core::io::StructFileRepOptionsCOP options) |
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| bool | core::io::pdb::dump_multimodel_pdb (utility::vector1< core::pose::PoseCOP > const &poses, std::string const &file_name) |
| | Writes poses to a single PDB file, returns false if an error occurs Use default StructFileRepOptions. More...
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| bool | core::io::pdb::dump_multimodel_pdb (utility::vector1< core::pose::PoseCOP > const &poses, String const &file_name, core::io::StructFileRepOptionsCOP options) |
| | Writes poses to a single PDB file, returns false if an error occurs. More...
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| void | core::io::pdb::dump_multimodel_pdb (utility::vector1< core::pose::PoseCOP > const &poses, std::ostream &out) |
| | Writes poses to a given stream in PDB file format Use default StructFileRepOptions. More...
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| void | core::io::pdb::dump_multimodel_pdb (utility::vector1< core::pose::PoseCOP > const &poses, std::ostream &out, core::io::StructFileRepOptionsCOP options) |
| | Writes poses to a given stream in PDB file format. More...
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| bool | core::io::pdb::add_to_multimodel_pdb (core::pose::Pose const &pose, std::string const &file_name, std::string const &model_tag, bool clear_existing_structures) |
| | Adds a pose to a multimodel pdb file (or creates the file) Use default StructFileRepOptions. More...
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| bool | core::io::pdb::add_to_multimodel_pdb (core::pose::Pose const &pose, std::string const &file_name, std::string const &model_tag, core::io::StructFileRepOptionsCOP options, bool clear_existing_structures) |
| | Adds a pose to a multimodel pdb file (or creates the file) More...
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| void | core::io::pdb::add_to_multimodel_pdb (core::pose::Pose const &pose, std::ostream &out, std::string const &model_tag) |
| | Adds a pose to a multimodel pdb file Use default StructFileRepOptions. More...
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| void | core::io::pdb::add_to_multimodel_pdb (core::pose::Pose const &pose, std::ostream &out, std::string const &model_tag, core::io::StructFileRepOptionsCOP options) |
| | Adds a pose to a multimodel pdb file. More...
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| std::string | core::io::pdb::create_pdb_contents_from_sfr (StructFileRep const &sfr, core::io::StructFileRepOptionsCOP options) |
| | create a full pdb as a string given a StructFileRep object More...
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| std::string | core::io::pdb::create_pdb_line_from_record (Record const &record) |
| | Create a formatted line for .pdb output. More...
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| std::vector< Record > | core::io::pdb::create_records_from_sfr (StructFileRep const &sfr, core::io::StructFileRepOptionsCOP options=nullptr) |
| | Create vector of records from given StructFileRep object. More...
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| pose::PDBInfoOP | core::io::pdb::create_pdb_info_for_single_residue_pose (pose::Pose const &pose, core::io::StructFileRepOptionsCOP) |
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| std::string | core::io::pdb::dump_pdb_residue (conformation::Residue const &rsd, core::io::StructFileRepOptionsCOP options=nullptr, core::Size start_atom_number=1) |
| | PyRosetta-Compatible; Writes pdb data for the given residue, beginning from the given atom number. More...
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| std::string | core::io::pdb::dump_pdb_residue (conformation::Residue const &rsd, core::Size &atom_number, core::io::StructFileRepOptionsCOP options=nullptr) |
| | PyRosetta-Compatible; Writes pdb data for the given residue, incrementing atom_number counter. More...
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| void | core::io::pdb::dump_pdb_residue (conformation::Residue const &rsd, std::ostream &out, core::Size start_atom_number=1, core::io::StructFileRepOptionsCOP options=nullptr) |
| | Writes pdb data for the given residue, beginning from the given atom number. More...
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| void | core::io::pdb::dump_pdb_residue (conformation::Residue const &rsd, core::Size &atom_number, std::ostream &out, core::io::StructFileRepOptionsCOP options=nullptr) |
| | Writes pdb data for the given residue, incrementing atom_number counter. More...
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| void | core::io::pdb::dump_pdb (core::pose::Pose const &pose, std::string const &jd2_job_data, utility::io::ozstream &out, std::string const &filename="") |
| | Writes a pose to a given stream in PDB file format, optionally appending a given string and optionally extracting scores from the pose. More...
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| void | core::io::pdb::dump_pdb (core::pose::Pose const &pose, std::string const &jd2_job_data, std::string &out, std::string const &filename="") |
| | Writes a pose to a given string in PDB file format, optionally appending a given string and optionally extracting scores from the pose. More...
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