protocols::make_rot_lib Namespace Reference

Classes
class	MakeRotLibJob
class	MakeRotLibJobInputter
class	MakeRotLibJobInputterCreator
struct	running_average_pair
	struct that is used in calc_centroids, values init to zero More...
class	MakeRotLibMover
struct	TorsionRange
struct	CentroidRotNum
class	MakeRotLibOptionsData
class	RotData

Typedefs
typedef utility::pointer::shared_ptr< MakeRotLibJob >	MakeRotLibJobOP
typedef utility::pointer::shared_ptr< MakeRotLibJob const >	MakeRotLibJobCOP
typedef utility::pointer::shared_ptr< MakeRotLibJobInputter >	MakeRotLibJobInputterOP
typedef utility::pointer::shared_ptr< MakeRotLibJobInputter const >	MakeRotLibJobInputterCOP
typedef utility::pointer::shared_ptr< MakeRotLibMover >	MakeRotLibMoverOP
typedef utility::pointer::shared_ptr< MakeRotLibMover const >	MakeRotLibMoverCOP
typedef utility::pointer::shared_ptr< MakeRotLibOptionsData >	MakeRotLibOptionsDataOP
typedef utility::pointer::shared_ptr< MakeRotLibOptionsData const >	MakeRotLibOptionsDataCOP
typedef utility::vector1< TorsionRange >	TorsionRangeVec
typedef utility::vector1< TorsionRangeVec >	TorsionRangeVecVec
typedef utility::vector1< CentroidRotNum >	CentroidRotNumVec
typedef utility::vector1< CentroidRotNumVec >	CentroidRotNumVecVec
typedef utility::vector1< RotData >	RotDataVec
typedef RotDataVec	RotVec

Enumerations
enum	MakeRotLibPolymerType { PEPTIDE , PEPTOID }

Functions
static basic::Tracer	TR ("protocols.make_rot_lib.MakeRotLibJobInputter")
static basic::Tracer	TR ("protocols.make_rot_lib.MakeRotLibMover")
static basic::Tracer	TR ("protocols.make_rot_lib.MakeRotLibOptionsData")
static basic::Tracer	TR ("protocols.make_rot_lib.RotData")
bool	operator== (RotData &r1, RotData &r2)

Typedef Documentation

CentroidRotNumVec

typedef utility::vector1< CentroidRotNum > protocols::make_rot_lib::CentroidRotNumVec

CentroidRotNumVecVec

typedef utility::vector1< CentroidRotNumVec > protocols::make_rot_lib::CentroidRotNumVecVec

MakeRotLibJobCOP

typedef utility::pointer::shared_ptr< MakeRotLibJob const > protocols::make_rot_lib::MakeRotLibJobCOP

MakeRotLibJobInputterCOP

typedef utility::pointer::shared_ptr< MakeRotLibJobInputter const > protocols::make_rot_lib::MakeRotLibJobInputterCOP

MakeRotLibJobInputterOP

typedef utility::pointer::shared_ptr< MakeRotLibJobInputter > protocols::make_rot_lib::MakeRotLibJobInputterOP

MakeRotLibJobOP

typedef utility::pointer::shared_ptr< MakeRotLibJob > protocols::make_rot_lib::MakeRotLibJobOP

MakeRotLibMoverCOP

typedef utility::pointer::shared_ptr< MakeRotLibMover const > protocols::make_rot_lib::MakeRotLibMoverCOP

MakeRotLibMoverOP

typedef utility::pointer::shared_ptr< MakeRotLibMover > protocols::make_rot_lib::MakeRotLibMoverOP

MakeRotLibOptionsDataCOP

typedef utility::pointer::shared_ptr< MakeRotLibOptionsData const > protocols::make_rot_lib::MakeRotLibOptionsDataCOP

MakeRotLibOptionsDataOP

typedef utility::pointer::shared_ptr< MakeRotLibOptionsData > protocols::make_rot_lib::MakeRotLibOptionsDataOP

RotDataVec

typedef utility::vector1<RotData> protocols::make_rot_lib::RotDataVec

RotVec

typedef RotDataVec protocols::make_rot_lib::RotVec

TorsionRangeVec

typedef utility::vector1< TorsionRange > protocols::make_rot_lib::TorsionRangeVec

TorsionRangeVecVec

typedef utility::vector1< TorsionRangeVec > protocols::make_rot_lib::TorsionRangeVecVec

Enumeration Type Documentation

MakeRotLibPolymerType

enum protocols::make_rot_lib::MakeRotLibPolymerType

Enumerator
PEPTIDE
PEPTOID

Function Documentation

operator==()

bool protocols::make_rot_lib::operator==	(	RotData &	r1,
		RotData &	r2
	)

TR() [1/4]

static basic::Tracer protocols::make_rot_lib::TR ( "protocols.make_rot_lib.MakeRotLibJobInputter"  )

static

Referenced by protocols::make_rot_lib::MakeRotLibMover::apply(), protocols::make_rot_lib::MakeRotLibMover::calc_final_rotamer_probs(), protocols::make_rot_lib::MakeRotLibMover::calc_standard_deviations(), protocols::make_rot_lib::MakeRotLibJobInputter::fill_jobs(), protocols::make_rot_lib::RotData::load(), protocols::make_rot_lib::MakeRotLibJobInputter::MakeRotLibJobInputter(), protocols::make_rot_lib::MakeRotLibMover::MakeRotLibMover(), protocols::make_rot_lib::MakeRotLibOptionsData::MakeRotLibOptionsData(), protocols::make_rot_lib::MakeRotLibMover::minimize_all_rotamers(), protocols::make_rot_lib::MakeRotLibMover::minimize_rotamer(), and protocols::make_rot_lib::MakeRotLibJobInputter::pose_from_job().

TR() [2/4]

static basic::Tracer protocols::make_rot_lib::TR ( "protocols.make_rot_lib.MakeRotLibMover"  )

static

TR() [3/4]

static basic::Tracer protocols::make_rot_lib::TR ( "protocols.make_rot_lib.MakeRotLibOptionsData"  )

static

TR() [4/4]

static basic::Tracer protocols::make_rot_lib::TR ( "protocols.make_rot_lib.RotData"  )

static