protocols::genetic_algorithm Namespace Reference

Classes
class	EntityElement
	Entity element. More...
class	EntityElementCreator
	Entity element creator. More...
class	EntityElementFactory
	The EntityElementFactory is responsible for instantiating entity elements from strings. More...
class	EntityElementRegistrator
class	Entity
struct	Vec1Hash
struct	EntityElementsEqual
class	EntityRandomizer
class	DiscreteRandomizer
class	PositionSpecificRandomizer
	different set of choices at each position in Entity's traits More...
class	FitnessFunction
class	GeneticAlgorithmBase
class	GeneticAlgorithm
class	Mutate1Randomizer

Typedefs
typedef utility::pointer::shared_ptr< EntityElement >	EntityElementOP
typedef utility::pointer::shared_ptr< EntityElement const >	EntityElementCOP
typedef utility::vector1< EntityElementOP >	EntityElements
typedef utility::pointer::shared_ptr< EntityElementCreator >	EntityElementCreatorOP
typedef utility::pointer::shared_ptr< EntityElementCreator const >	EntityElementCreatorCOP
typedef utility::pointer::shared_ptr< Entity >	EntityOP
typedef utility::pointer::shared_ptr< Entity const >	EntityCOP
typedef utility::pointer::shared_ptr< EntityRandomizer >	EntityRandomizerOP
typedef utility::pointer::shared_ptr< EntityRandomizer const >	EntityRandomizerCOP
typedef utility::pointer::shared_ptr< PositionSpecificRandomizer >	PositionSpecificRandomizerOP
typedef utility::pointer::shared_ptr< PositionSpecificRandomizer const >	PositionSpecificRandomizerCOP
typedef utility::pointer::shared_ptr< GeneticAlgorithmBase >	GeneticAlgorithmBaseOP
typedef utility::pointer::shared_ptr< GeneticAlgorithmBase const >	GeneticAlgorithmBaseCOP
typedef utility::pointer::shared_ptr< GeneticAlgorithm >	GeneticAlgorithmOP
typedef utility::pointer::shared_ptr< GeneticAlgorithm const >	GeneticAlgorithmCOP
typedef utility::pointer::shared_ptr< Mutate1Randomizer >	Mutate1RandomizerOP
typedef utility::pointer::shared_ptr< Mutate1Randomizer const >	Mutate1RandomizerCOP

Functions
std::ostream &	operator<< (std::ostream &os, Entity const &entity)
template<typename T >
bool	lt_OP_deref (utility::pointer::shared_ptr< T > const &a, utility::pointer::shared_ptr< T > const &b)
	for sorting owning pointers by that to which they point More...
template<typename T >
bool	eq_OP_deref (utility::pointer::shared_ptr< T > const &a, utility::pointer::shared_ptr< T > const &b)
	for assessing equality between owning pointers by that to which they point More...
static basic::Tracer	TR ("protocols.genetic_algorithm")

Typedef Documentation

EntityCOP

typedef utility::pointer::shared_ptr< Entity const > protocols::genetic_algorithm::EntityCOP

EntityElementCOP

typedef utility::pointer::shared_ptr< EntityElement const > protocols::genetic_algorithm::EntityElementCOP

EntityElementCreatorCOP

typedef utility::pointer::shared_ptr< EntityElementCreator const > protocols::genetic_algorithm::EntityElementCreatorCOP

EntityElementCreatorOP

typedef utility::pointer::shared_ptr< EntityElementCreator > protocols::genetic_algorithm::EntityElementCreatorOP

EntityElementOP

typedef utility::pointer::shared_ptr< EntityElement > protocols::genetic_algorithm::EntityElementOP

EntityElements

typedef utility::vector1< EntityElementOP > protocols::genetic_algorithm::EntityElements

EntityOP

typedef utility::pointer::shared_ptr< Entity > protocols::genetic_algorithm::EntityOP

EntityRandomizerCOP

typedef utility::pointer::shared_ptr< EntityRandomizer const > protocols::genetic_algorithm::EntityRandomizerCOP

EntityRandomizerOP

typedef utility::pointer::shared_ptr< EntityRandomizer > protocols::genetic_algorithm::EntityRandomizerOP

GeneticAlgorithmBaseCOP

typedef utility::pointer::shared_ptr< GeneticAlgorithmBase const > protocols::genetic_algorithm::GeneticAlgorithmBaseCOP

GeneticAlgorithmBaseOP

typedef utility::pointer::shared_ptr< GeneticAlgorithmBase > protocols::genetic_algorithm::GeneticAlgorithmBaseOP

GeneticAlgorithmCOP

typedef utility::pointer::shared_ptr< GeneticAlgorithm const > protocols::genetic_algorithm::GeneticAlgorithmCOP

GeneticAlgorithmOP

typedef utility::pointer::shared_ptr< GeneticAlgorithm > protocols::genetic_algorithm::GeneticAlgorithmOP

Mutate1RandomizerCOP

typedef utility::pointer::shared_ptr< Mutate1Randomizer const > protocols::genetic_algorithm::Mutate1RandomizerCOP

Mutate1RandomizerOP

typedef utility::pointer::shared_ptr< Mutate1Randomizer > protocols::genetic_algorithm::Mutate1RandomizerOP

PositionSpecificRandomizerCOP

typedef utility::pointer::shared_ptr< PositionSpecificRandomizer const > protocols::genetic_algorithm::PositionSpecificRandomizerCOP

PositionSpecificRandomizerOP

typedef utility::pointer::shared_ptr< PositionSpecificRandomizer > protocols::genetic_algorithm::PositionSpecificRandomizerOP

Function Documentation

eq_OP_deref()

template<typename T >

bool protocols::genetic_algorithm::eq_OP_deref	(	utility::pointer::shared_ptr< T > const &	a,
		utility::pointer::shared_ptr< T > const &	b
	)

for assessing equality between owning pointers by that to which they point

References core::pose::motif::a(), and protocols::match::upstream::b.

lt_OP_deref()

template<typename T >

bool protocols::genetic_algorithm::lt_OP_deref	(	utility::pointer::shared_ptr< T > const &	a,
		utility::pointer::shared_ptr< T > const &	b
	)

for sorting owning pointers by that to which they point

References core::pose::motif::a(), and protocols::match::upstream::b.

operator<<()

std::ostream & protocols::genetic_algorithm::operator<<	(	std::ostream &	os,
		Entity const &	entity
	)

References protocols::genetic_algorithm::Entity::show().

TR()

static basic::Tracer protocols::genetic_algorithm::TR ( "protocols.genetic_algorithm"  )

static

Referenced by protocols::genetic_algorithm::GeneticAlgorithmBase::fill_with_perturbations_of_existing_entities(), and protocols::genetic_algorithm::GeneticAlgorithmBase::read_entities_checkpoint().