#include <core/pack/task/PackerTask.fwd.hh>
#include <core/pack/task/RotamerSampleOptions.hh>
#include <core/pack/rotamer_set/RotamerSets.fwd.hh>
#include <core/chemical/ResidueType.fwd.hh>
#include <core/conformation/Residue.fwd.hh>
#include <core/pose/Pose.fwd.hh>
#include <utility/graph/Graph.fwd.hh>
#include <core/scoring/ScoreFunction.hh>
#include <utility/io/izstream.fwd.hh>
#include <utility/vector1.hh>

Namespaces
	core
	A class for reading in the atom type properties.

	core::pack

	core::pack::rotamer_set

Typedefs
typedef utility::vector1< Real >	core::pack::rotamer_set::DihedralSet

Functions
void	core::pack::rotamer_set::read_DNA_rotlib (utility::io::izstream &lib_stream, utility::vector1< DihedralSet * > &library)

void	core::pack::rotamer_set::build_lib_dna_rotamers (utility::vector1< DihedralSet * > const &library, Size const resid, pose::Pose const &pose, chemical::ResidueTypeCOP concrete_residue, utility::vector1< conformation::ResidueOP > &rotamers)

void	core::pack::rotamer_set::build_random_dna_rotamers (Size const resid, pose::Pose const &pose, chemical::ResidueTypeCOP concrete_residue, pack::task::ExtraRotSample const &level, utility::vector1< conformation::ResidueOP > &rotamers)

void	core::pack::rotamer_set::build_dna_rotamers (Size const resid, pose::Pose const &pose, chemical::ResidueTypeCOP concrete_residue, pack::task::PackerTask const &task, utility::vector1< conformation::ResidueOP > &rotamers)

void	core::pack::rotamer_set::build_rotamers_from_rotamer_bins (conformation::Residue const &residue, utility::vector1< conformation::ResidueOP > &rotamers)
	Make a rotamer (Residue) for every combination of torsion angle in the rotamer bins listed in the params file for the given Residue. More...

conformation::ResidueOP	core::pack::rotamer_set::create_oriented_water_rotamer (chemical::ResidueType const &h2o_type, Vector const &xyz_atom1, Vector const &xyz_O, Vector const &xyz_atom2, std::string const &name1, std::string const &name2, conformation::Residue const &tp5)

void	core::pack::rotamer_set::build_anchorless_water_rotamers (Size const seqpos, chemical::ResidueType const &h2o_type, pose::Pose const &pose, utility::vector1< conformation::ResidueOP > &new_rotamers, pack::task::PackerTask const &task, utility::graph::GraphCOP packer_neighbor_graph, scoring::ScoreFunction const &score_fxn)
	builds water molecule rotamers on top of cubic lattice in hydrate/SPaDES protocol More...

void	core::pack::rotamer_set::build_independent_water_rotamers (Size const seqpos_water, chemical::ResidueType const &h2o_type, pack::task::PackerTask const &task, pose::Pose const &pose, utility::graph::GraphCOP packer_neighbor_graph, utility::vector1< conformation::ResidueOP > &new_rotamers, scoring::ScoreFunction const &scorefxn)

void	core::pack::rotamer_set::debug_dump_rotamers (utility::vector1< conformation::ResidueOP > &rotamers)

void	core::pack::rotamer_set::build_dependent_water_rotamers (RotamerSets const &rotsets, Size const seqpos_water, chemical::ResidueType const &h2o_type, pack::task::PackerTask const &task, pose::Pose const &pose, utility::graph::GraphCOP packer_neighbor_graph, utility::vector1< conformation::ResidueOP > &new_rotamers, scoring::ScoreFunction const &scorefxn)

Namespaces

Typedefs

Functions