Directory dependency graph for pack:
Directories | |
| directory | annealer |
| directory | dunbrack |
| directory | guidance_scoreterms |
| directory | hbonds |
| directory | interaction_graph |
| directory | palette |
| directory | rotamer_set |
| directory | rotamers |
| directory | scmin |
| directory | task |
Files | |
| file | make_symmetric_task.cc |
| file | make_symmetric_task.hh |
| utility functions for handling with symmetric conformations | |
| file | min_pack.cc |
| pack rotamers with minimization module | |
| file | min_pack.hh |
| pack and minimize sidechains | |
| file | optimizeH.cc |
| standard hydrogen optimization subroutine | |
| file | optimizeH.hh |
| declaration of standard hydrogen optimization subroutine | |
| file | pack_missing_sidechains.cc |
| function to fix missing sidechains in input PDBs (especially those surface lysines that get sidechain-backbone clashes!) | |
| file | pack_missing_sidechains.hh |
| header for subroutine to run rotamer trials on residues missing sidechain density in a PDB | |
| file | pack_rotamers.cc |
| pack rotamers module | |
| file | pack_rotamers.hh |
| pack rotamers module header | |
| file | packer_neighbors.cc |
| creates a graph that describes the possible connectivity induced by designing-in larger side chains | |
| file | packer_neighbors.hh |
| creates a graph that describes the possible connectivity induced by designing-in larger side chains | |
| file | rotamer_trials.cc |
| rotamer trials module | |
| file | rotamer_trials.hh |
| rotamer trials module header | |
| file | rtmin.cc |
| rotamer trials with minimization module header. Originally concieved of and implemented in Rosetta++ by Chu Wang. | |
| file | rtmin.hh |
| rotamer trials with minimization module header | |
| file | util.cc |
| Simple utilities for computing rotamer recovery between 2 poses. | |
| file | util.hh |
| Simple utilities for computing rotamer recovery between 2 poses. | |
