packer_neighbors.cc File Reference

creates a graph that describes the possible connectivity induced by designing-in larger side chains More...

#include <core/pack/packer_neighbors.hh>
#include <core/pack/rotamer_set/RotamerSetOperation.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/Conformation.hh>
#include <core/pose/Pose.hh>
#include <core/scoring/Energies.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionInfo.hh>
#include <utility/graph/Graph.hh>
#include <core/conformation/PointGraph.hh>
#include <core/conformation/find_neighbors.hh>
#include <core/conformation/symmetry/SymmetricConformation.hh>
#include <core/conformation/symmetry/SymmetryInfo.hh>
#include <utility/vector1.functions.hh>
#include <core/conformation/PointGraphData.hh>
#include <utility/graph/UpperEdgeGraph.hh>
#include <utility/vector1.hh>
#include <core/scoring/EnergyGraph.hh>
#include <core/pack/task/ResidueLevelTask.hh>

Namespaces
	core
	A class for reading in the atom type properties.
	core::pack

Functions
utility::graph::GraphOP	core::pack::create_packer_graph (pose::Pose const &pose, scoring::ScoreFunction const &scfxn, task::PackerTaskCOP task)
	Constructs a graph where edges represent the possibility of interactions between residue pairs. More...
utility::graph::GraphOP	core::pack::create_packer_graph (pose::Pose const &pose, scoring::ScoreFunction const &scfxn, task::PackerTaskCOP task, core::Size total_nodes, utility::vector1< Distance > const &residue_radii)
	Constructs a graph where edges represent the possibility of interactions between residue pairs. More...
utility::vector1< Distance >	core::pack::find_residue_max_radii (pose::Pose const &pose, task::PackerTaskCOP the_task)
	for each residue in the protein, finds the largest bounding sphere over all allowable rotameric/chemical modifications possible given the input task. More...
void	core::pack::pack_scorefxn_pose_handshake (pose::Pose &pose, scoring::ScoreFunction const &scfxn)

Detailed Description

creates a graph that describes the possible connectivity induced by designing-in larger side chains

Author

Andrew Leaver-Fay (aleav.nosp@m.erfa.nosp@m.y@gma.nosp@m.il.c.nosp@m.om)