Classes
struct	pre_talaris_2013_behavior_settings

Functions
static basic::Tracer	TR ("core.init")

void	init_mpi (int, char **)

void	init_options (int argc, char *argv[])
	Initialize the option system, which manages command line options. More...

void	init_crash_reporter (int argc, char *argv[])
	Setup crash reporter. More...

void	init_complex_options ()
	After the tracers have been initialized, now go back and modify some of the values in the options system based on (hard coded) inter-flag relationships. Some of these relationships are set in the basic::options::process() function, some of them are handled in this .cc file. More...

void	init_tracers ()
	Tracers control output to std::cout and std::cerr. More...

void	init_source_revision ()
	Choose to output source version control information? More...

void	init_paths ()
	Setup basic search paths. More...

void	check_deprecated_flags ()
	Check for deprecated flags specified by the user and output error messages if necessary. More...

void	report_application_command (int argc, char *argv[])
	Describe the application execution command. More...

void	random_delay ()
	Choose to randomly delay execution to desyncronize parallel execution. More...

void	locate_rosetta_database ()
	Locate rosetta_database. More...

void	check_load_fconfig ()
	Check if common config file exists and load it/them as flags files. More...

void	init_profiling ()
	Profiling measures execution performance. More...

void	init_resources ()
	Set up system resources. More...

void	init (int argc, char *argv[])
	Init basic core systems: options system, random system. More...

void	init (utility::vector1< std::string > const &args)
	wrapper for core system Init More...

void	init_mpi (int argc, char *argv[])
	Initialize MPI (message passing interface) for parallel applications. More...

static basic::Tracer	TR ("core.init.score_function_corrections")

void	init_score_function_corrections (utility::options::OptionCollection &options)
	Initialize the latest and greatest score function parameters. More...

void	init_revert_to_pre_talaris_2013_mistake (utility::options::OptionCollection &options)
	Initialize the "revert to before Talaris2013" mistake. More...

void	revert_to_pre_talaris_2013_defaults (utility::options::OptionCollection &options)
	Reset a set of flags to their pre-talaris behavior. More...

void	init_pre_beta_nov15_etable (utility::options::OptionCollection &options)
	Initialize the -pre_beta_nov15 etable. More...

void	init_revert_to_talaris (utility::options::OptionCollection &options)
	Initialize the revert-to-Talaris2014. More...

void	init_hbond_sp2_correction (utility::options::OptionCollection &options)
	Initialize the hbond Sp2 correction Deprecated as Talaris2013 becomes default. More...

void	init_facts_correction (utility::options::OptionCollection &options)
	Initialize the FACTS correction. More...

void	init_correct_correction (utility::options::OptionCollection &options)
	Initialize the -correct correction. More...

void	init_shapovalov_lib_fixes_enable_correction (utility::options::OptionCollection &options)
	Initialize the -shapovalov_lib_fixes_enable correction. More...

void	init_crystal_refinement_correction (utility::options::OptionCollection &options)
	Initialize the crystal refinement correction. More...

void	init_beta_correction (utility::options::OptionCollection &options)
	Initialize the most recent beta score function (-beta) More...

void	init_beta_july15_correction (utility::options::OptionCollection &options)
	Initialize the -beta_july15 score function. More...

void	init_beta_nov16_correction (utility::options::OptionCollection &options, bool setweight=true)
	Initialize the -beta_nov16 score function. More...

void	init_nonideal_correction (utility::options::OptionCollection &options)
	Initialize nonideal bond geometry correction. More...

void	init_restore_score12prime (utility::options::OptionCollection &options)
	restore the the score function to the Score12prime version More...

void	init_spades_score_function_correction (utility::options::OptionCollection &options)
	Alter the water/water and water/non-water solvation potential if the score:water_hybrid_sf flag is on the command line. More...

void	init_gen_potential_settings (utility::options::OptionCollection &options)
	Initialize new atom types for Rosetta generic potential. More...

void	init_dna_correction (utility::options::OptionCollection &options)
	Apply some DNA-specific mods that are still in testing phase; only if -corrections::newdna present. More...

Variables
static EnergyMethodRegistrator< energy_methods::AARepeatEnergyCreator >	AARepeatEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::AACompositionEnergyCreator >	AACompositionEnergyCreator_registrator

static EnergyMethodRegistrator< pack::guidance_scoreterms::approximate_buried_unsat_penalty::ApproximateBuriedUnsatPenaltyCreator >	ApproximateBuriedUnsatPenaltyCreator_registrator

static EnergyMethodRegistrator< scoring::constraints::ConstraintsEnergyCreator >	ConstraintsEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods ::CentroidDisulfideEnergyCreator >	CentroidDisulfideEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::DisulfideMatchingEnergyCreator >	DisulfideMatchingEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::FullatomDisulfideEnergyCreator >	FullatomDisulfideEnergyCreator_registrator

static EnergyMethodRegistrator< scoring::etable::EtableEnergyCreator >	EtableEnergyCreator_registrator

static EnergyMethodRegistrator< scoring::etable::EtableClassicIntraEnergyCreator >	EtableClassicIntraEnergyCreator_registrator

static EnergyMethodRegistrator< pack::guidance_scoreterms::hbnet_energy::HBNetEnergyCreator >	HBNetEnergyCreator_registrator

static EnergyMethodRegistrator< scoring::hbonds::HBondEnergyCreator >	HBondEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::MHCEpitopeEnergyCreator >	MHCEpitopeEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::NPDHBondEnergyCreator >	NPDHBondEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::ArgCationPiEnergyCreator >	ArgCationPiEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::AspartimidePenaltyEnergyCreator >	AspartimidePenaltyEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::ChainbreakEnergyCreator >	ChainbreakEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::BranchEnergyCreator >	BranchEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::CenPairEnergyCreator >	CenPairEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::CenPairMotifEnergyCreator >	CenPairMotifEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::CenPairMotifDegreeEnergyCreator >	CenPairMotifDegreeEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::ContactOrderEnergyCreator >	ContactOrderEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::IntermolEnergyCreator >	IntermolEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::MissingEnergyCreator >	MissingEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::EnvEnergyCreator >	EnvEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::EnvSmoothEnergyCreator >	EnvSmoothEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::OmegaTetherEnergyCreator >	OmegaTetherEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::OtherPoseEnergyCreator >	OtherPoseEnergyCreator_registrator

static EnergyMethodRegistrator< core::scoring::methods::NMerRefEnergyCreator >	NMerRefEnergyCreator_registrator

static EnergyMethodRegistrator< core::scoring::methods::NMerPSSMEnergyCreator >	NMerPSSMEnergyCreator_registrator

static EnergyMethodRegistrator< core::scoring::methods::NMerSVMEnergyCreator >	NMerSVMEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::P_AA_EnergyCreator >	P_AA_EnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::P_AA_ss_EnergyCreator >	P_AA_ss_EnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::P_AA_pp_EnergyCreator >	P_AA_pp_EnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::AbegoEnergyCreator >	AbegoEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::PackStatEnergyCreator >	PackStatEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::PairEnergyCreator >	PairEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::PeptideBondEnergyCreator >	PeptideBondEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::ProClosureEnergyCreator >	ProClosureEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::BurialEnergyCreator >	BurialCreator_registrator

static EnergyMethodRegistrator< energy_methods::Burial_v2EnergyCreator >	Burial_v2Creator_registrator

static EnergyMethodRegistrator< energy_methods::CovalentLabelingEnergyCreator >	CovalentLabelingEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::CovalentLabelingFAEnergyCreator >	CovalentLabelingFAEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::DEPC_MS_EnergyCreator >	DEPC_MS_EnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::HRFDynamicsEnergyCreator >	HRFDynamicsEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::HRF_MSLabelingEnergyCreator >	HRF_MSLabelingEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::CCS_IMMSEnergyCreator >	CCS_IMMSEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::RG_Energy_FastCreator >	RG_Energy_FastCreator_registrator

static EnergyMethodRegistrator< energy_methods::RG_LocalEnergyCreator >	RG_LocalEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::SA_EnergyCreator >	SA_EnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::SSElementMotifContactEnergyCreator >	SSElementMotifContactEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::D2H_SA_EnergyCreator >	D2H_SA_EnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::ProQ_EnergyCreator >	ProQ_EnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::RMS_EnergyCreator >	RMS_EnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::RamaPreProEnergyCreator >	RamaPreProEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::RamachandranEnergy2BCreator >	RamachandranEnergy2BCreator_registrator

static EnergyMethodRegistrator< energy_methods::RamachandranEnergyCreator >	RamachandranEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::ReferenceEnergyCreator >	ReferenceEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::ReferenceEnergyNoncanonicalCreator >	ReferenceEnergyNoncanonicalCreator_registrator

static EnergyMethodRegistrator< energy_methods::SecondaryStructureEnergyCreator >	SecondaryStructureEnergyCreator_registrator

static EnergyMethodRegistrator< pack::guidance_scoreterms::sap::SapConstraintEnergyCreator >	SapConstraintEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::dfire::DFIRE_EnergyCreator >	DFIRE_EnergyCreator_registrator

static EnergyMethodRegistrator< scoring::vdwaals::VDW_EnergyCreator >	VDW_EnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::GoapEnergyCreator >	GoapEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::RingClosureEnergyCreator >	RingClosureEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::AromaticBackboneRestraintEnergyCreator >	AromaticBackboneRestraintEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::SugarBackboneEnergyCreator >	SugarBackboneEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::DumpTrajectoryEnergyCreator >	DumpTrajectoryEnergy_registrator

static EnergyMethodRegistrator< energy_methods::NetChargeEnergyCreator >	NetChargeEnergyCreator_registrator

static EnergyMethodRegistrator< pack::guidance_scoreterms::buried_unsat_penalty::BuriedUnsatPenaltyCreator >	BuriedUnsatPenaltyCreator_registrator

static EnergyMethodRegistrator< pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyEnergyCreator >	VoidsPenaltyEnergyCreator_registrator

static EnergyMethodRegistrator< pack::dunbrack::DunbrackEnergyCreator >	DunbrackEnergyCreator_registrator

static EnergyMethodRegistrator< pack::dunbrack::cenrot::CenRotDunEnergyCreator >	CenRotDunEnergyCreator_registrator

static EnergyMethodRegistrator< scoring::nv::NVscoreCreator >	NVscoreCreator_registrator

static EnergyMethodRegistrator< scoring::orbitals::OrbitalsScoreCreator >	OrbitalsScoreCreator_registrator

static EnergyMethodRegistrator< scoring::interface_::DDPscoreCreator >	DDPscoreCreator_registrator

static EnergyMethodRegistrator< scoring::carbon_hbonds::CarbonHBondEnergyCreator >	CarbonHBondEnergyCreator_registrator

static EnergyMethodRegistrator< scoring::custom_pair_distance::FullatomCustomPairDistanceEnergyCreator >	FullatomCustomPairDistanceEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::CustomAtomPairEnergyCreator >	CustomAtomPairEnergy_registrator

static EnergyMethodRegistrator< energy_methods::FastDensEnergyCreator >	FastDensEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::ElecDensCenEnergyCreator >	ElecDensCenEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::ElecDensAllAtomCenEnergyCreator >	ElecDensAllAtomCenEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::ElecDensEnergyCreator >	ElecDensEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::XtalMLEnergyCreator >	XtalMLEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::ElecDensAtomwiseEnergyCreator >	ElecDensAtomwiseEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::ExactOccludedHbondSolEnergyCreator >	ExactOccludedHbondSolEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::ContextDependentGeometricSolEnergyCreator >	ContextDependentGeometricSolEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::ContextIndependentGeometricSolEnergyCreator >	ContextIndependentGeometricSolEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::OccludedHbondSolEnergyCreator >	OccludedHbondSolEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::OccludedHbondSolEnergy_onebodyCreator >	OccludedHbondSolEnergy_onebodyCreator_registrator

static EnergyMethodRegistrator< scoring::elec::FA_ElecEnergyCreator >	FA_ElecEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::ImplicitMembraneElecEnergyCreator >	ImplicitMembraneElecEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::RNA_FA_ElecEnergyCreator >	RNA_FA_ElecEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::FA_ElecEnergyAroAroCreator >	FA_ElecEnergyAroAroCreator_registrator

static EnergyMethodRegistrator< energy_methods::FA_ElecEnergyAroAllCreator >	FA_ElecEnergyAroAllCreator_registrator

static EnergyMethodRegistrator< energy_methods::FA_GrpElecEnergyCreator >	FA_GrpElecEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::HackAroEnergyCreator >	HackAroEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::DEEREnergyCreator >	DEEREnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::DNAChiEnergyCreator >	DNAChiEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::DNATorsionEnergyCreator >	DNATorsionEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::LoopCloseEnergyCreator >	LoopCloseEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::MgEnergyCreator >	MgEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::RNA_MgPointEnergyCreator >	RNA_MgPointEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::DNA_BaseEnergyCreator >	DNA_BaseEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::DNA_DihedralEnergyCreator >	DNA_DihedralEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::DirectReadoutEnergyCreator >	DirectReadoutEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::DistanceChainbreakEnergyCreator >	DistanceChainbreakEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::Fa_MbenvEnergyCreator >	Fa_MbenvEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::Fa_MbsolvEnergyCreator >	Fa_MbsolvEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::FreeDOF_EnergyCreator >	FreeDOF_EnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::GenBornEnergyCreator >	GenBornEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::GenericBondedEnergyCreator >	GenericBondedEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::VdWTinkerEnergyCreator >	VdWTinkerEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::MultipoleElecEnergyCreator >	MultipoleElecEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::SASAEnergyCreator >	SASAEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::FACTSEnergyCreator >	FACTSEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::HybridVDW_EnergyCreator >	HybridVDW_EnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::LK_PolarNonPolarEnergyCreator >	LK_PolarNonPolarEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::LK_hackCreator >	LK_hackCreator_registrator

static EnergyMethodRegistrator< scoring::lkball::LK_BallEnergyCreator >	LK_BallEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::LinearChainbreakEnergyCreator >	LinearChainbreakEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::LinearBranchEnergyCreator >	LinearBranchEnergyCreator_registrator

static EnergyMethodRegistrator< scoring::lkball::LK_DomeEnergyCreator >	LK_DomeEnergyCreator_registrator

static EnergyMethodRegistrator< pack::guidance_scoreterms::lk_dome::LK_DomePackEnergyCreator >	LK_DomePackEnergyCreator_registrator

static EnergyMethodRegistrator< scoring::methods::MMBondAngleEnergyCreator >	MMBondAngleEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::CartesianBondedEnergyCreator >	CartesianBondedEnergyCreator_registrator

static EnergyMethodRegistrator< scoring::methods::MMBondLengthEnergyCreator >	MMBondLengthEnergyCreator_registrator

static EnergyMethodRegistrator< scoring::methods::MMTorsionEnergyCreator >	MMTorsionEnergyCreator_registrator

static EnergyMethodRegistrator< scoring::methods::MMLJEnergyInterCreator >	MMLJEnergyInterCreator_registrator

static EnergyMethodRegistrator< scoring::methods::MMLJEnergyIntraCreator >	MMLJEnergyIntraCreator_registrator

static EnergyMethodRegistrator< energy_methods::MembraneCbetaEnergyCreator >	MembraneCbetaEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::MembraneCenPairEnergyCreator >	MembraneCenPairEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::MembraneEnvEnergyCreator >	MembraneEnvEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::MembraneEnvPenaltiesCreator >	MembraneEnvPenaltiesCreator_registrator

static EnergyMethodRegistrator< energy_methods::MPPairEnergyCreator >	MPPairEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::MPEnvEnergyCreator >	MPEnvEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::MPCbetaEnergyCreator >	MPCbetaEnergyCreator_registrator

static EnergyMethodRegistrator< scoring::membrane::MPNonHelixPenaltyCreator >	MPNonHelixPenaltyCreator_registrator

static EnergyMethodRegistrator< scoring::membrane::MPTerminiPenaltyCreator >	MPTerminiPenaltyCreator_registrator

static EnergyMethodRegistrator< scoring::membrane::MPTMProjPenaltyCreator >	MPTMProjPenaltyCreator_registrator

static EnergyMethodRegistrator< energy_methods::FaMPEnvEnergyCreator >	FaMPEnvEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::FaMPSolvEnergyCreator >	FaMPSolvEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::FaMPEnvSmoothEnergyCreator >	FaMPEnvSMoothEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::FaMPAsymEzCBEnergyCreator >	FaMPAsymEzCBEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::FaMPAsymEzCGEnergyCreator >	FaMPAsymEzCGEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::MPResidueLipophilicityEnergyCreator >	MPResidueLipophilicityEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::MPHelicalityEnergyCreator >	MPHelicalityEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::MPSpanInsertionEnergyCreator >	MPSpanInsertionEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::MPSpanAngleEnergyCreator >	MPSpanAngleEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::SmoothCenPairEnergyCreator >	SmoothCenPairEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::SmoothEnvEnergyCreator >	SmoothEnvEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::CenRotPairEnergyCreator >	CenRotPairEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::CenRotEnvEnergyCreator >	CenRotEnvEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::CenHBEnergyCreator >	CenHBEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::MembraneLipoCreator >	MembraneLipoCreator_registrator

static EnergyMethodRegistrator< energy_methods::MembraneEnvSmoothEnergyCreator >	MembraneEnvSmoothEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::pHEnergyCreator >	pHEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::ChemicalShiftAnisotropyEnergyCreator >	ChemicalShiftAnisotropyEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::DipolarCouplingEnergyCreator >	DipolarCouplingEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::ResidualDipolarCouplingEnergyCreator >	ResidualDipolarCouplingEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::ResidualDipolarCouplingEnergy_RohlCreator >	ResidualDipolarCouplingEnergy_RohlCreator_registrator

static EnergyMethodRegistrator< energy_methods::MotifDockEnergyCreator >	MotifDockEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::SuckerEnergyCreator >	SuckerEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::GaussianOverlapEnergyCreator >	GaussianOverlapEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::YHHPlanarityEnergyCreator >	YYHPlanarityEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::HydroxylTorsionEnergyCreator >	HydroxylTorsionEnergyCreator_registrator

static EnergyMethodRegistrator< pack::interaction_graph::SurfaceEnergyCreator >	SurfaceEnergyCreator_registrator

static EnergyMethodRegistrator< pack::interaction_graph::HPatchEnergyCreator >	HPatchEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::SymmetricLigandEnergyCreator >	SymmetricLigandEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::UnfoldedStateEnergyCreator >	UnfoldedStateEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::SplitUnfoldedTwoBodyEnergyCreator >	SplitUnfoldedTwoBodyEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::WaterAdductHBondEnergyCreator >	WaterAdductHBondEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::WaterAdductIntraEnergyCreator >	WaterAdductIntraEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::WaterSpecificEnergyCreator >	WaterSpecificEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::HolesEnergyCreator >	HolesEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::SurfVolEnergyCreator >	SurfVolEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::SurfEnergyCreator >	SurfEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::RG_Energy_RNACreator >	RG_Energy_RNACreator_registrator

static EnergyMethodRegistrator< energy_methods::RNA_BulgeEnergyCreator >	RNA_BulgeEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::RNA_ChemicalMappingEnergyCreator >	RNA_ChemicalMappingEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::RNA_DataBackboneEnergyCreator >	RNA_DataBackboneEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::RNA_FullAtomStackingEnergyCreator >	RNA_FullAtomStackingEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::RNA_JR_SuiteEnergyCreator >	RNA_JR_SuiteEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::RNA_LJ_BaseEnergyCreator >	RNA_LJ_BaseEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::RNA_PairwiseLowResolutionEnergyCreator >	RNA_PairwiseLowResolutionEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::RNA_PartitionEnergyCreator >	RNA_PartitionEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::RNP_LowResEnergyCreator >	RNP_LowResEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::RNP_LowResPairDistEnergyCreator >	RNP_LowResPairDistEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::RNP_LowResStackEnergyCreator >	RNP_LowResStackEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::RNA_StubCoordinateEnergyCreator >	RNA_StubCoordinateEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::RNA_SugarCloseEnergyCreator >	RNA_SugarCloseEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::RNA_SuiteEnergyCreator >	RNA_SuiteEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::TNA_SuiteEnergyCreator >	TNA_SuiteEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::RNA_TorsionEnergyCreator >	RNA_TorsionEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::RNA_VDW_EnergyCreator >	RNA_VDW_EnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::RNA_FullAtomVDW_BasePhosphateCreator >	RNA_FullAtomVDW_BasePhosphateCreator_registrator

static EnergyMethodRegistrator< energy_methods::StackElecEnergyCreator >	StackElecEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::RNA_ChemicalShiftEnergyCreator >	NA_ChemicalShiftEnergyCreator_registrator

static EnergyMethodRegistrator< scoring::sym_e::symECreator >	symECreator_registrator

static EnergyMethodRegistrator< energy_methods::PoissonBoltzmannEnergyCreator >	PoissonBoltzmannEnergyCreator_registrator

static EnergyMethodRegistrator< core::energy_methods::RNA_CoarseDistEnergyCreator >	RNA_CoarseDistEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::FastSAXSEnergyCreator >	FastSAXSEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::SAXSEnergyCreatorCEN >	SAXSEnergyCreatorCEN_registrator

static EnergyMethodRegistrator< energy_methods::SAXSEnergyCreatorFA >	SAXSEnergyCreatorFA_registrator

static EnergyMethodRegistrator< energy_methods::SAXSEnergyCreator >	SAXSEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::PointWaterEnergyCreator >	PointWaterEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::FiberDiffractionEnergyCreator >	FiberDiffractionEnergyCreator_registrator

static EnergyMethodRegistrator< energy_methods::FiberDiffractionEnergyDensCreator >	FiberDiffractionEnergyDensCreator_registrator

static RotamerLibrarySpecificationRegistrator< chemical::rotamers::BasicRotamerLibrarySpecificationCreator >	BasicRotamerLibrarySpecificationCreator_registrator

static RotamerLibrarySpecificationRegistrator< chemical::rotamers::CenrotRotamerLibrarySpecificationCreator >	CenrotRotamerLibrarySpecificationCreator_registrator

static RotamerLibrarySpecificationRegistrator< chemical::rotamers::DunbrackRotamerLibrarySpecificationCreator >	DunbrackRotamerLibrarySpecificationCreator_registrator

static RotamerLibrarySpecificationRegistrator< chemical::rotamers::NCAARotamerLibrarySpecificationCreator >	NCAARotamerLibrarySpecificationCreator_registrator

static RotamerLibrarySpecificationRegistrator< chemical::rotamers::PDBRotamerLibrarySpecificationCreator >	PDBRotamerLibrarySpecificationCreator_registrator

static SingleResidueRotamerLibraryRegistrator< pack::dunbrack::SingleResidueDunbrackLibraryCreator >	SingleResidueDunbrackLibraryCreator_registrator

static SingleResidueRotamerLibraryRegistrator< pack::rotamers::SingleBasicRotamerLibraryCreator >	SingleBasicRotamerLibraryCreator_registrator

static SingleResidueRotamerLibraryRegistrator< pack::dunbrack::cenrot::SingleResidueCenrotLibraryCreator >	SingleCenrotRotamerLibraryCreator_registrator

static SingleResidueRotamerLibraryRegistrator< pack::rotamers::SingleLigandRotamerLibraryCreator >	SingleLigandRotamerLibraryCreator_registrator

static SingleResidueRotamerLibraryRegistrator< pack::rotamers::SingleNCAARotamerLibraryCreator >	SingleNCAARotamerLibraryCreator_registrator

static SingleResidueRotamerLibraryRegistrator< pack::rotamers::StoredRotamerLibraryCreator >	StoredRotamerLibraryCreator_registrator

static ConstraintRegistrator< core::scoring::constraints::AmbiguousConstraintCreator >	AmbiguousConstraintCreator_registrator

static ConstraintRegistrator< core::scoring::constraints::AmbiguousNMRConstraintCreator >	AmbiguousNMRConstraintCreator_registrator

static ConstraintRegistrator< core::scoring::constraints::AmbiguousNMRDistanceConstraintCreator >	AmbiguousNMRDistanceConstraintCreator_registrator

static ConstraintRegistrator< core::scoring::constraints::AngleConstraintCreator >	AngleConstraintCreator_registrator

static ConstraintRegistrator< core::scoring::constraints::AtomPairConstraintCreator >	AtomPairConstraintCreator_registrator

static ConstraintRegistrator< core::scoring::constraints::BasePairConstraintCreator >	BasePairConstraintCreator_registrator

static ConstraintRegistrator< core::scoring::constraints::BigBinConstraintCreator >	BigBinConstraintCreator_registrator

static ConstraintRegistrator< core::scoring::constraints::CoordinateConstraintCreator >	CoordinateConstraintCreator_registrator

static ConstraintRegistrator< core::scoring::constraints::DihedralConstraintCreator >	DihedralConstraintCreator_registrator

static ConstraintRegistrator< core::scoring::constraints::DihedralPairConstraintCreator >	DihedralPairConstraintCreator_registrator

static ConstraintRegistrator< core::scoring::constraints::KofNConstraintCreator >	KofNConstraintCreator_registrator

static ConstraintRegistrator< core::scoring::constraints::LocalCoordinateConstraintCreator >	LocalCoordinateConstraintCreator_registrator

static ConstraintRegistrator< core::scoring::constraints::MultiConstraintCreator >	MultiConstraintCreator_registrator

static ConstraintRegistrator< core::scoring::constraints::NamedAtomPairConstraintCreator >	NamedAtomPairConstraintCreator_registrator

static ConstraintRegistrator< core::scoring::constraints::NamedAngleConstraintCreator >	NamedAngleConstraintCreator_registrator

static ConstraintRegistrator< core::scoring::constraints::FabConstraintCreator >	FabConstraintCreator_registrator

static ConstraintRegistrator< core::pack::dunbrack::DunbrackConstraintCreator >	DunbrackConstraintCreator_registrator

static ConstraintRegistrator< core::scoring::constraints::SiteConstraintCreator >	SiteConstraintCreator_registrator

static ConstraintRegistrator< core::scoring::constraints::SiteConstraintResiduesCreator >	SiteConstraintResiduesCreator_registrator

static ConstraintRegistrator< core::scoring::constraints::SequenceProfileConstraintCreator >	SequenceProfileConstraintCreator_registrator

static SilentStructRegistrator< core::io::silent::ProteinSilentStructCreator >	ProteinSilentStructCreator_registrator

static SilentStructRegistrator< core::io::silent::ProteinSilentStruct_SinglePrecCreator >	ProteinSilentStruct_SinglePrecCreator_registrator

static SilentStructRegistrator< core::io::silent::RNA_SilentStructCreator >	RNA_SilentStructCreator_registrator

static SilentStructRegistrator< core::import_pose::PDBSilentStructCreator >	PDBSilentStructCreator_registrator

static SilentStructRegistrator< core::io::silent::BinarySilentStructCreator >	BinarySilentStructCreator_registrator

static SilentStructRegistrator< core::io::silent::ScoreFileSilentStructCreator >	ScoreFileSilentStructCreator_registrator

static SilentStructRegistrator< core::io::silent::ScoreJumpFileSilentStructCreator >	ScoreJumpFileSilentStructCreator_registrator

static SilentStructRegistrator< core::io::silent::RigidBodySilentStructCreator >	RigidBodySilentStructCreator_registrator

static SequenceRegistrator< core::sequence::SimpleSequenceCreator >	SimpleSequenceCreator_registrator

static SequenceRegistrator< core::sequence::SequenceProfileCreator >	SequenceProfileCreator_registrator

static SequenceRegistrator< core::sequence::SequenceCouplingCreator >	SequenceCouplingCreator_registrator

static SequenceRegistrator< core::sequence::CompositeSequenceCreator >	CompositeSequenceCreator_registrator

static TaskOperationRegistrator< RestrictYSDesignCreator >	RestrictYSDesignCreator_registrator

static TaskOperationRegistrator< PreventRepackingCreator >	PreventRepackingCreator_registrator

static TaskOperationRegistrator< PreserveCBetaCreator >	PreserveCBetaCreator_registrator

static TaskOperationRegistrator< AppendRotamerSetCreator >	AppendRotamerSetCreator_registrator

static TaskOperationRegistrator< AppendRotamerCreator >	AppendRotamerCreator_registrator

static TaskOperationRegistrator< DesignRestrictionsCreator >	DesignRestrictionsCreator_registrator

static TaskOperationRegistrator< EnableMultiCoolAnnealerCreator >	EnableMultiCoolAnnealerCreator_registrator

static TaskOperationRegistrator< EnableSmartAnnealerCreator >	EnableSmartAnnealerCreator_registrator

static TaskOperationRegistrator< ExtraRotamersCreator >	ExtraRotamersCreator_registrator

static TaskOperationRegistrator< ExtraChiCutoffCreator >	ExtraChiCutoffCreator_registrator

static TaskOperationRegistrator< SetRotamerCouplingsCreator >	SetRotamerCouplingsCreator_registrator

static TaskOperationRegistrator< SetRotamerLinksCreator >	SetRotamerLinksCreator_registrator

static TaskOperationRegistrator< ReadResfileCreator >	ReadResfileCreator_registrator

static TaskOperationRegistrator< ReadResfileAndObeyLengthEventsCreator >	ReadResfileAndObeyLengthEventsCreator_registrator

static TaskOperationRegistrator< IncludeCurrentCreator >	IncludeCurrentCreator_registrator

static TaskOperationRegistrator< InitializeExtraRotsFromCommandlineCreator >	InitializeExtraRotsFromCommandlineCreator_registrator

static TaskOperationRegistrator< InitializeFromCommandlineCreator >	InitializeFromCommandlineCreator_registrator

static TaskOperationRegistrator< UseMultiCoolAnnealerCreator >	UseMultiCoolAnnealerCreator_registrator

static TaskOperationRegistrator< InitializeFromOptionCollectionCreator >	InitializeFromOptionCollectionCreator_registrator

static TaskOperationRegistrator< ExtraRotamersGenericCreator >	ExtraRotamersGenericCreator_registrator

static TaskOperationRegistrator< RotamerExplosionCreator >	RotamerExplosionCreator_registrator

static TaskOperationRegistrator< RestrictAbsentCanonicalAASCreator >	RestrictAbsentCanonicalAASCreator_registrator

static TaskOperationRegistrator< DisallowIfNonnativeCreator >	DisallowIfNonnativeCreator_registrator

static TaskOperationRegistrator< RestrictToSpecifiedBaseResidueTypesCreator >	RestrictToSpecifiedBaseResidueTypesCreator_registrator

static TaskOperationRegistrator< ProhibitSpecifiedBaseResidueTypesCreator >	ProhibitSpecifiedBaseResidueTypesCreator_registrator

static TaskOperationRegistrator< RestrictToResiduePropertiesCreator >	RestrictToResiduePropertiesCreator_registrator

static TaskOperationRegistrator< ProhibitResiduePropertiesCreator >	ProhibitResiduePropertiesCreator_registrator

static TaskOperationRegistrator< RestrictResidueToRepackingCreator >	RestrictResidueToRepackingCreator_registrator

static TaskOperationRegistrator< RestrictToRepackingCreator >	RestrictToRepackingCreator_registrator

static TaskOperationRegistrator< RestrictInteractionGraphThreadsOperationCreator >	RestrictInteractionGraphThreadsOperationCreator_registrator

static TaskOperationRegistrator< OperateOnCertainResiduesCreator >	OperateOnCertainResiduesCreator_registrator

static TaskOperationRegistrator< OperateOnResidueSubsetCreator >	OperateOnResidueSubsetCreator_registrator

static TaskOperationRegistrator< NoRepackDisulfidesCreator >	NoRepackDisulfidesCreator_registrator

static TaskOperationRegistrator< ClashBasedRepackShellCreator >	ClashBasedRepackShellCreator_registrator

static TaskOperationRegistrator< OptCysHGCreator >	OptCysHGCreator_registrator

static TaskOperationRegistrator< OptHCreator >	OptHCreator_registrator

static TaskOperationRegistrator< KeepSequenceSymmetryCreator >	KeepSequenceSymmetryCreator_registrator

static ResLvlTaskOperationRegistrator< RestrictToRepackingRLTCreator >	RestrictToRepackingRLTCreator_registrator

static ResLvlTaskOperationRegistrator< RestrictAbsentCanonicalAASRLTCreator >	RestrictAbsentCanonicalAASRLTCreator_registrator

static ResLvlTaskOperationRegistrator< RestrictAbsentCanonicalAASExceptNativeRLTCreator >	RestrictAbsentCanonicalAASExceptNativeRLTCreator_registrator

static ResLvlTaskOperationRegistrator< DisallowIfNonnativeRLTCreator >	DisallowIfNonnativeRLTCreator_registrator

static ResLvlTaskOperationRegistrator< PreventRepackingRLTCreator >	PreventRepackingRLTCreator_registrator

static ResLvlTaskOperationRegistrator< AddBehaviorRLTCreator >	AddBehaviorRLTCreator_registrator

static ResLvlTaskOperationRegistrator< IncludeCurrentRLTCreator >	IncludeCurrentRLTCreator_registrator

static ResLvlTaskOperationRegistrator< PreserveCBetaRLTCreator >	PreserveCBetaRLTCreator_registrator

static ResLvlTaskOperationRegistrator< ExtraChiCutoffRLTCreator >	ExtraChiCutoffRLTCreator_registrator

static ResLvlTaskOperationRegistrator< ExtraRotamersGenericRLTCreator >	ExtraRotamersGenericRLTCreator_registrator

static ResFilterRegistrator< ResidueHasPropertyCreator >	ResidueHasPropertyCreator_registrator

static ResFilterRegistrator< ResiduePDBInfoHasLabelCreator >	ResiduePDBInfoHasLabelCreator_registrator

static ResFilterRegistrator< ResidueLacksPropertyCreator >	ResidueLacksPropertyCreator_registrator

static ResFilterRegistrator< ResidueName3IsCreator >	ResidueName3IsCreator_registrator

static ResFilterRegistrator< ResidueName3IsntCreator >	ResidueName3IsntCreator_registrator

static ResFilterRegistrator< ResidueIndexIsCreator >	ResidueIndexIsCreator_registrator

static ResFilterRegistrator< ResidueIndexIsntCreator >	ResidueIndexIsntCreator_registrator

static ResFilterRegistrator< ChainIsCreator >	ChainIsCreator_registrator

static ResFilterRegistrator< ChainIsntCreator >	ChainIsntCreator_registrator

static ResFilterRegistrator< AnyResFilterCreator >	AnyResFilterCreator_registrator

static ResFilterRegistrator< AllResFilterCreator >	AllResFilterCreator_registrator

static ResFilterRegistrator< NoResFilterCreator >	NoResFilterCreator_registrator

static ResFilterRegistrator< ResidueTypeFilterCreator >	ResidueTypeResFilterCreator_registrator

static ResidueSelectorRegistrator< AndResidueSelectorCreator >	reg_AndResidueSelectorCreator

static ResidueSelectorRegistrator< BFactorSelectorCreator >	reg_BfactorSelectorCreator

static ResidueSelectorRegistrator< BinSelectorCreator >	reg_BinSelectorCreator

static ResidueSelectorRegistrator< BondedResidueSelectorCreator >	reg_BondedResidueSelectorCreator

static ResidueSelectorRegistrator< ChainSelectorCreator >	reg_ChainSelectorCreator

static ResidueSelectorRegistrator< core::pack::task::residue_selector::ClashBasedShellSelectorCreator >	reg_ClashBasedShellSelectorCreator

static ResidueSelectorRegistrator< CloseContactResidueSelectorCreator >	reg_CloseContactResidueSelectorCreator

static ResidueSelectorRegistrator< DensityFitResidueSelectorCreator >	reg_DensityFitResidueSelectorCreator

static ResidueSelectorRegistrator< GlycanResidueSelectorCreator >	reg_GlycanResidueSelectorCreator

static ResidueSelectorRegistrator< RandomGlycanFoliageSelectorCreator >	reg_RandomGlycanFoliageSelectorCreator

static ResidueSelectorRegistrator< GlycanLayerSelectorCreator >	reg_GlycanLayerSelectorCreator

static ResidueSelectorRegistrator< GlycanSequonsSelectorCreator >	reg_GlycanSequonsSelectorCreator

static ResidueSelectorRegistrator< InterGroupInterfaceByVectorSelectorCreator >	reg_InterGroupInterfaceByVectorSelectorCreator

static ResidueSelectorRegistrator< JumpDownstreamSelectorCreator >	reg_JumpDownstreamSelectorCreator

static ResidueSelectorRegistrator< JumpUpstreamSelectorCreator >	reg_JumpUpstreamSelectorCreator

static ResidueSelectorRegistrator< AsymmetricUnitSelectorCreator >	reg_AsymmetricUnitSelectorCreator

static ResidueSelectorRegistrator< LogicResidueSelectorCreator >	reg_LogicResidueSelectorCreator

static ResidueSelectorRegistrator< NeighborhoodResidueSelectorCreator >	reg_NeighborhoodResidueSelectorCreator

static ResidueSelectorRegistrator< NotResidueSelectorCreator >	reg_NotResidueSelectorCreator

static ResidueSelectorRegistrator< NumNeighborsSelectorCreator >	reg_NumNeighborsSelectorCreator

static ResidueSelectorRegistrator< LayerSelectorCreator >	reg_LayerSelectorCreator

static ResidueSelectorRegistrator< OrResidueSelectorCreator >	reg_OrResidueSelectorCreator

static ResidueSelectorRegistrator< PhiSelectorCreator >	reg_PhiSelectorCreator

static ResidueSelectorRegistrator< PrimarySequenceNeighborhoodSelectorCreator >	reg_PrimarySequenceNeighborhoodSelectorCreator

static ResidueSelectorRegistrator< RandomResidueSelectorCreator >	reg_RandomResidueSelectorCreator

static ResidueSelectorRegistrator< ResidueIndexSelectorCreator >	reg_ResidueIndexSelectorCreator

static ResidueSelectorRegistrator< ResidueNameSelectorCreator >	reg_ResidueNameSelectorCreator

static ResidueSelectorRegistrator< ResidueInSequenceMotifSelectorCreator >	reg_ResidueInSequenceMotifSelectorCreator

static ResidueSelectorRegistrator< ResiduePropertySelectorCreator >	reg_ResiduePropertySelectorCreator

static ResidueSelectorRegistrator< ResidueSpanSelectorCreator >	reg_ResidueSpanSelectorCreator

static ResidueSelectorRegistrator< TrueResidueSelectorCreator >	reg_TrueResidueSelectorCreator

static ResidueSelectorRegistrator< FalseResidueSelectorCreator >	reg_FalseResidueSelectorCreator

static ResidueSelectorRegistrator< ResidueInMembraneSelectorCreator >	reg_ResidueInMembraneSelectorCreator

static ResidueSelectorRegistrator< ResiduePDBInfoHasLabelSelectorCreator >	reg_ResiduePDBInfoHasLabelSelectorCreator

static ResidueSelectorRegistrator< SecondaryStructureSelectorCreator >	reg_SecondaryStructureSelectorCreator

static ResidueSelectorRegistrator< SSElementSelectorCreator >	reg_SSElementSelectorCreator

static ResidueSelectorRegistrator< SymmetricalResidueSelectorCreator >	reg_SymmetricalResidueSelectorCreator

static ResidueSelectorRegistrator< ScoreTermValueBasedSelectorCreator >	reg_ScoreTermValueBasedSelectorCreator

static ResidueSelectorRegistrator< SliceResidueSelectorCreator >	reg_SliceResidueSelectorCreator

static ResidueSelectorRegistrator< SimpleMetricSelectorCreator >	reg_SimpleMetricSelectorCreator

static JumpSelectorRegistrator< AndJumpSelectorCreator >	reg_AndJumpSelectorCreator

static JumpSelectorRegistrator< ExclusivelySharedJumpSelectorCreator >	reg_ExclusivelySharedJumpSelectorCreator

static JumpSelectorRegistrator< InterchainJumpSelectorCreator >	reg_InterchainJumpSelectorCreator

static JumpSelectorRegistrator< JumpForResidueCreator >	reg_JumpForResidueCreator

static JumpSelectorRegistrator< JumpIndexSelectorCreator >	reg_JumpIndexSelectorCreator

static JumpSelectorRegistrator< NotJumpSelectorCreator >	reg_NotJumpSelectorCreator

static JumpSelectorRegistrator< OrJumpSelectorCreator >	reg_OrJumpSelectorCreator

static PackerPaletteRegistrator< CustomBaseTypePackerPaletteCreator >	reg_CustomBaseTypePackerPaletteCreator

static PackerPaletteRegistrator< DefaultPackerPaletteCreator >	reg_DefaultPackerPaletteCreator

static PackerPaletteRegistrator< NoDesignPackerPaletteCreator >	reg_NoDesignPackerPaletteCreator

static ResourceLoaderRegistrator< core::conformation::symmetry::SymmDataLoaderCreator >	SymmDataLoaderCreator_registrator

static ResourceLoaderRegistrator< core::import_pose::PoseResourceLoaderCreator >	PoseResourceLoaderCreator_registrator

pre_talaris_2013_behavior_settings const	restore_sc12_settings

Function Documentation

◆ check_deprecated_flags()

void core::init::check_deprecated_flags ( )

Check for deprecated flags specified by the user and output error messages if necessary.

Check for deprecated flags and utility exit if any deprecated flags are detected.

@detail If you deprecate a long standing flag, add a line to this function to describe what the deprecated flag has been replaced with. If the user specifies one of these flags, Rosetta will utility exit with a helpful message directing the user towards the new functionality

References TR().

Referenced by init().

◆ check_load_fconfig()

void core::init::check_load_fconfig ( )

Check if common config file exists and load it/them as flags files.

References TR().

Referenced by init().

◆ init() [1/2]

void core::init::init	(	int	argc,
		char *	argv[]
	)

Init basic core systems: options system, random system.

References check_deprecated_flags(), check_load_fconfig(), protocols::init::init(), init_complex_options(), init_crash_reporter(), init_mpi(), init_options(), init_paths(), init_profiling(), init_resources(), init_score_function_corrections(), init_source_revision(), init_tracers(), core::chemical::bcl::initialize_bcl_main(), core::chemical::bcl::initialize_bcl_random(), core::id::initialize_core_id_globals(), core::chemical::rdkit::initialize_rdkit_random(), core::chemical::bcl::locate_bcl(), locate_rosetta_database(), random_delay(), report_application_command(), core::chemical::bcl::require_bcl(), and TR().

Referenced by protocols::canonical_sampling::CanonicalSamplingMover::apply(), protocols::hybridization::BackboneTorsionPerturbation::BackboneTorsionPerturbation(), protocols::protein_interface_design::movers::BestHotspotCstMover::BestHotspotCstMover(), protocols::indexed_structure_store::search::bind_QueryDatabase(), protocols::md::CartesianMD::CartesianMD(), protocols::hybridization::CartesianSampler::CartesianSampler(), protocols::toolbox::KCluster::cluster(), protocols::LoopRebuild::desired_loops(), protocols::rpc::BasicCmdLineInit::do_init(), protocols::docking::DockingProtocol::DockingProtocol(), core::scoring::electron_density::ElectronDensity::ElectronDensity(), protocols::simple_filters::EnergyPerResidueFilter::EnergyPerResidueFilter(), protocols::enzdes::EnzScoreFilter::EnzScoreFilter(), core::scoring::fiber_diffraction::FiberDiffraction::FiberDiffraction(), protocols::magnesium::SampleGrid::figure_out_box_bounds(), protocols::hybridization::FragmentBiasAssigner::FragmentBiasAssigner(), protocols::LoopRebuild::get_ccd_closure_exist(), protocols::LoopRebuild::get_chain_break_tolerance(), protocols::LoopRebuild::get_combine_if_fail_exist(), protocols::LoopRebuild::get_desired_loops_exist(), core::pose::rna::get_leontis_westhof_table(), protocols::LoopRebuild::get_loop_combine_rate(), protocols::LoopRebuild::get_looprlx_cycle_ratio(), protocols::magnesium::get_octahedral_uniform_rotation_sampler(), protocols::LoopRebuild::get_rmsd_tolerance(), protocols::LoopRebuild::get_score_filter_cutoff(), protocols::magnesium::get_water_uniform_rotation_sampler(), protocols::loophash::MPI_LoopHashRefine_Emperor::go(), protocols::loophash::MPI_LoopHashRefine_Master::go(), protocols::mpi_refinement::MPI_Refine_Emperor::go(), protocols::mpi_refinement::MPI_Refine_Master::go(), protocols::hybridization::HybridizeProtocol::HybridizeProtocol(), protocols::magnesium::MgHydrater::hydrate_magnesium_in_pose(), protocols::init::init(), init(), core::pose::xyzStripeHashPose::init_posehash(), protocols::sic_dock::xyzStripeHashPoseWithMeta::init_with_pose(), protocols::stepwise::monte_carlo::mover::initialize_attachment_type_name(), core::pose::full_model_info::initialize_full_model_parameter_type_name(), protocols::stepwise::monte_carlo::mover::initialize_move_type_name(), core::scoring::sasa::input_legrand_sasa_dats(), core::scoring::packstat::old::input_sasa_dats(), core::scoring::input_sasa_dats(), protocols::hybridization::InsertChunkMover::InsertChunkMover(), protocols::simple_filters::InterfaceHbondsFilter::InterfaceHbondsFilter(), protocols::protein_interface_design::filters::InterfaceHolesFilter::InterfaceHolesFilter(), protocols::simple_filters::InterfaceHydrophobicResidueContactsFilter::InterfaceHydrophobicResidueContactsFilter(), core::import_pose::is_blank_seq(), protocols::enzdes::LigInterfaceEnergyFilter::LigInterfaceEnergyFilter(), protocols::LoopRebuild::loop_model(), core::pose::PDBInfo::PDBInfo(), protocols::cyclic_peptide::PeptideStubMover::PeptideStubMover(), core::fragment::rna::FullAtomRNA_Fragments::read_vall_torsions(), core::io::silent::SilentStruct::rename_energies(), protocols::simple_filters::ResidueIEFilter::ResidueIEFilter(), protocols::simple_filters::ResiduesInInterfaceFilter::ResiduesInInterfaceFilter(), protocols::protein_interface_design::Revert::Revert(), protocols::simple_moves::ShakeStructureMover::run_mc(), protocols::symmetry::SymShakeStructureMover::run_mc(), protocols::mpi_refinement::Serial_Refine::Serial_Refine(), protocols::simple_moves::ShakeStructureMover::set_temp_based_on_ens_diversity(), protocols::score_filters::ScoreCutoffFilter::set_unweighted(), protocols::protein_interface_design::movers::SetupHotspotConstraintsLoopsMover::SetupHotspotConstraintsLoopsMover(), protocols::protein_interface_design::movers::SetupHotspotConstraintsMover::SetupHotspotConstraintsMover(), protocols::LoopRebuild::shorten_long_terminal_loop(), protocols::sparta::Sparta::SpartaLib::SpartaLib(), protocols::moves::to_string(), and protocols::stepwise::modeler::rna::phosphate::to_string().

◆ init() [2/2]

void core::init::init ( utility::vector1< std::string > const & args )

wrapper for core system Init

References init().

◆ init_beta_correction()

void core::init::init_beta_correction ( utility::options::OptionCollection & options )

Initialize the most recent beta score function (-beta)

References init_beta_july15_correction(), init_beta_nov16_correction(), and init_gen_potential_settings().

Referenced by init_score_function_corrections().

◆ init_beta_july15_correction()

void core::init::init_beta_july15_correction ( utility::options::OptionCollection & options )

Initialize the -beta_july15 score function.

References TR().

Referenced by init_beta_correction().

◆ init_beta_nov16_correction()

void core::init::init_beta_nov16_correction	(	utility::options::OptionCollection &	options,
		bool	setweight
	)

Initialize the -beta_nov16 score function.

References TR().

Referenced by init_beta_correction().

◆ init_complex_options()

void core::init::init_complex_options ( )

After the tracers have been initialized, now go back and modify some of the values in the options system based on (hard coded) inter-flag relationships. Some of these relationships are set in the basic::options::process() function, some of them are handled in this .cc file.

Referenced by init().

◆ init_correct_correction()

void core::init::init_correct_correction ( utility::options::OptionCollection & options )

Initialize the -correct correction.

References core::scoring::p_aa_pp.

Referenced by init_score_function_corrections().

◆ init_crash_reporter()

void core::init::init_crash_reporter	(	int	argc,
		char *	argv[]
	)

Setup crash reporter.

Referenced by init().

◆ init_crystal_refinement_correction()

void core::init::init_crystal_refinement_correction ( utility::options::OptionCollection & options )

Initialize the crystal refinement correction.

Referenced by init_score_function_corrections().

◆ init_dna_correction()

void core::init::init_dna_correction ( utility::options::OptionCollection & options )

Apply some DNA-specific mods that are still in testing phase; only if -corrections::newdna present.

Referenced by init_score_function_corrections().

◆ init_facts_correction()

void core::init::init_facts_correction ( utility::options::OptionCollection & options )

Initialize the FACTS correction.

Referenced by init_score_function_corrections().

◆ init_gen_potential_settings()

void core::init::init_gen_potential_settings ( utility::options::OptionCollection & options )

Initialize new atom types for Rosetta generic potential.

References TR().

Referenced by init_beta_correction().

◆ init_hbond_sp2_correction()

void core::init::init_hbond_sp2_correction ( utility::options::OptionCollection & options )

Initialize the hbond Sp2 correction Deprecated as Talaris2013 becomes default.

References TR().

Referenced by init_score_function_corrections().

◆ init_mpi() [1/2]

void core::init::init_mpi	(	int	argc,
		char *	argv[]
	)

Initialize MPI (message passing interface) for parallel applications.

◆ init_mpi() [2/2]

void core::init::init_mpi	(	int	,
		char **
	)

Referenced by init().

◆ init_nonideal_correction()

void core::init::init_nonideal_correction ( utility::options::OptionCollection & options )

Initialize nonideal bond geometry correction.

References protocols::antibody::design::dualspace, core::scoring::get_score_function(), and TR().

Referenced by init_score_function_corrections().

◆ init_options()

void core::init::init_options	(	int	argc,
		char *	argv[]
	)

Initialize the option system, which manages command line options.

Referenced by init().

◆ init_paths()

void core::init::init_paths ( )

Setup basic search paths.

References protocols::hybridization::path.

Referenced by init().

◆ init_pre_beta_nov15_etable()

void core::init::init_pre_beta_nov15_etable ( utility::options::OptionCollection & options )

Initialize the -pre_beta_nov15 etable.

Referenced by init_score_function_corrections().

◆ init_profiling()

void core::init::init_profiling ( )

Profiling measures execution performance.

Referenced by init().

◆ init_resources()

void core::init::init_resources ( )

Set up system resources.

References PROCESS_STACK_SIZE.

Referenced by init().

◆ init_restore_score12prime()

void core::init::init_restore_score12prime ( utility::options::OptionCollection & options )

restore the the score function to the Score12prime version

References revert_to_pre_talaris_2013_defaults().

◆ init_revert_to_pre_talaris_2013_mistake()

void core::init::init_revert_to_pre_talaris_2013_mistake ( utility::options::OptionCollection & options )

Initialize the "revert to before Talaris2013" mistake.

References revert_to_pre_talaris_2013_defaults().

Referenced by init_score_function_corrections().

◆ init_revert_to_talaris()

void core::init::init_revert_to_talaris ( utility::options::OptionCollection & options )

Initialize the revert-to-Talaris2014.

References TR().

Referenced by init_score_function_corrections().

◆ init_score_function_corrections()

void core::init::init_score_function_corrections ( utility::options::OptionCollection & options )

Initialize the latest and greatest score function parameters.

References init_beta_correction(), init_correct_correction(), init_crystal_refinement_correction(), init_dna_correction(), init_facts_correction(), init_hbond_sp2_correction(), init_nonideal_correction(), init_pre_beta_nov15_etable(), init_revert_to_pre_talaris_2013_mistake(), init_revert_to_talaris(), init_shapovalov_lib_fixes_enable_correction(), and init_spades_score_function_correction().

Referenced by init().

◆ init_shapovalov_lib_fixes_enable_correction()

void core::init::init_shapovalov_lib_fixes_enable_correction ( utility::options::OptionCollection & options )

Initialize the -shapovalov_lib_fixes_enable correction.

Referenced by init_score_function_corrections().

◆ init_source_revision()

void core::init::init_source_revision ( )

Choose to output source version control information?

References TR().

Referenced by init().

◆ init_spades_score_function_correction()

void core::init::init_spades_score_function_correction ( utility::options::OptionCollection & options )

Alter the water/water and water/non-water solvation potential if the score:water_hybrid_sf flag is on the command line.

References TR().

Referenced by init_score_function_corrections().

◆ init_tracers()

void core::init::init_tracers ( )

Tracers control output to std::cout and std::cerr.

References core::chemical::bcl::initialize_bcl_tracers(), core::chemical::rdkit::initialize_rdkit_tracers(), and protocols::wum::mpi_rank().

Referenced by init().

◆ locate_rosetta_database()

void core::init::locate_rosetta_database ( )

Locate rosetta_database.

References protocols::hybridization::path, and TR().

Referenced by init().

◆ random_delay()

void core::init::random_delay ( )

Choose to randomly delay execution to desyncronize parallel execution.

References TR().

Referenced by init().

◆ report_application_command()

void core::init::report_application_command	(	int	argc,
		char *	argv[]
	)

Describe the application execution command.

References TR().

Referenced by init().

◆ revert_to_pre_talaris_2013_defaults()

void core::init::revert_to_pre_talaris_2013_defaults ( utility::options::OptionCollection & options )

Reset a set of flags to their pre-talaris behavior.

Referenced by init_restore_score12prime(), and init_revert_to_pre_talaris_2013_mistake().

◆ TR() [1/2]

static basic::Tracer core::init::TR ( "core.init" )

static

Referenced by check_deprecated_flags(), check_load_fconfig(), init(), init_beta_july15_correction(), init_beta_nov16_correction(), init_gen_potential_settings(), init_hbond_sp2_correction(), init_nonideal_correction(), init_revert_to_talaris(), init_source_revision(), init_spades_score_function_correction(), locate_rosetta_database(), random_delay(), and report_application_command().

◆ TR() [2/2]

static basic::Tracer core::init::TR ( "core.init.score_function_corrections" )

static

Variable Documentation

◆ AACompositionEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::AACompositionEnergyCreator > core::init::AACompositionEnergyCreator_registrator

static

◆ AARepeatEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::AARepeatEnergyCreator > core::init::AARepeatEnergyCreator_registrator

static

◆ AbegoEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::AbegoEnergyCreator > core::init::AbegoEnergyCreator_registrator

static

◆ AddBehaviorRLTCreator_registrator

ResLvlTaskOperationRegistrator< AddBehaviorRLTCreator > core::init::AddBehaviorRLTCreator_registrator

static

◆ AllResFilterCreator_registrator

ResFilterRegistrator< AllResFilterCreator > core::init::AllResFilterCreator_registrator

static

◆ AmbiguousConstraintCreator_registrator

ConstraintRegistrator< core::scoring::constraints::AmbiguousConstraintCreator > core::init::AmbiguousConstraintCreator_registrator

static

◆ AmbiguousNMRConstraintCreator_registrator

ConstraintRegistrator< core::scoring::constraints::AmbiguousNMRConstraintCreator > core::init::AmbiguousNMRConstraintCreator_registrator

static

◆ AmbiguousNMRDistanceConstraintCreator_registrator

ConstraintRegistrator< core::scoring::constraints::AmbiguousNMRDistanceConstraintCreator > core::init::AmbiguousNMRDistanceConstraintCreator_registrator

static

◆ AngleConstraintCreator_registrator

ConstraintRegistrator< core::scoring::constraints::AngleConstraintCreator > core::init::AngleConstraintCreator_registrator

static

◆ AnyResFilterCreator_registrator

ResFilterRegistrator< AnyResFilterCreator > core::init::AnyResFilterCreator_registrator

static

◆ AppendRotamerCreator_registrator

TaskOperationRegistrator< AppendRotamerCreator > core::init::AppendRotamerCreator_registrator

static

◆ AppendRotamerSetCreator_registrator

TaskOperationRegistrator< AppendRotamerSetCreator > core::init::AppendRotamerSetCreator_registrator

static

◆ ApproximateBuriedUnsatPenaltyCreator_registrator

EnergyMethodRegistrator< pack::guidance_scoreterms::approximate_buried_unsat_penalty::ApproximateBuriedUnsatPenaltyCreator > core::init::ApproximateBuriedUnsatPenaltyCreator_registrator

static

◆ ArgCationPiEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::ArgCationPiEnergyCreator > core::init::ArgCationPiEnergyCreator_registrator

static

◆ AromaticBackboneRestraintEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::AromaticBackboneRestraintEnergyCreator > core::init::AromaticBackboneRestraintEnergyCreator_registrator

static

◆ AspartimidePenaltyEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::AspartimidePenaltyEnergyCreator > core::init::AspartimidePenaltyEnergyCreator_registrator

static

◆ AtomPairConstraintCreator_registrator

ConstraintRegistrator< core::scoring::constraints::AtomPairConstraintCreator > core::init::AtomPairConstraintCreator_registrator

static

◆ BasePairConstraintCreator_registrator

ConstraintRegistrator< core::scoring::constraints::BasePairConstraintCreator > core::init::BasePairConstraintCreator_registrator

static

◆ BasicRotamerLibrarySpecificationCreator_registrator

RotamerLibrarySpecificationRegistrator< chemical::rotamers::BasicRotamerLibrarySpecificationCreator > core::init::BasicRotamerLibrarySpecificationCreator_registrator

static

◆ BigBinConstraintCreator_registrator

ConstraintRegistrator< core::scoring::constraints::BigBinConstraintCreator > core::init::BigBinConstraintCreator_registrator

static

◆ BinarySilentStructCreator_registrator

SilentStructRegistrator< core::io::silent::BinarySilentStructCreator > core::init::BinarySilentStructCreator_registrator

static

◆ BranchEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::BranchEnergyCreator > core::init::BranchEnergyCreator_registrator

static

◆ Burial_v2Creator_registrator

EnergyMethodRegistrator< energy_methods::Burial_v2EnergyCreator > core::init::Burial_v2Creator_registrator

static

◆ BurialCreator_registrator

EnergyMethodRegistrator< energy_methods::BurialEnergyCreator > core::init::BurialCreator_registrator

static

◆ BuriedUnsatPenaltyCreator_registrator

EnergyMethodRegistrator< pack::guidance_scoreterms::buried_unsat_penalty::BuriedUnsatPenaltyCreator > core::init::BuriedUnsatPenaltyCreator_registrator

static

◆ CarbonHBondEnergyCreator_registrator

EnergyMethodRegistrator< scoring::carbon_hbonds::CarbonHBondEnergyCreator > core::init::CarbonHBondEnergyCreator_registrator

static

◆ CartesianBondedEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::CartesianBondedEnergyCreator > core::init::CartesianBondedEnergyCreator_registrator

static

◆ CCS_IMMSEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::CCS_IMMSEnergyCreator > core::init::CCS_IMMSEnergyCreator_registrator

static

◆ CenHBEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::CenHBEnergyCreator > core::init::CenHBEnergyCreator_registrator

static

◆ CenPairEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::CenPairEnergyCreator > core::init::CenPairEnergyCreator_registrator

static

◆ CenPairMotifDegreeEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::CenPairMotifDegreeEnergyCreator > core::init::CenPairMotifDegreeEnergyCreator_registrator

static

◆ CenPairMotifEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::CenPairMotifEnergyCreator > core::init::CenPairMotifEnergyCreator_registrator

static

◆ CenRotDunEnergyCreator_registrator

EnergyMethodRegistrator< pack::dunbrack::cenrot::CenRotDunEnergyCreator > core::init::CenRotDunEnergyCreator_registrator

static

◆ CenRotEnvEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::CenRotEnvEnergyCreator > core::init::CenRotEnvEnergyCreator_registrator

static

◆ CenRotPairEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::CenRotPairEnergyCreator > core::init::CenRotPairEnergyCreator_registrator

static

◆ CenrotRotamerLibrarySpecificationCreator_registrator

RotamerLibrarySpecificationRegistrator< chemical::rotamers::CenrotRotamerLibrarySpecificationCreator > core::init::CenrotRotamerLibrarySpecificationCreator_registrator

static

◆ CentroidDisulfideEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods ::CentroidDisulfideEnergyCreator > core::init::CentroidDisulfideEnergyCreator_registrator

static

◆ ChainbreakEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::ChainbreakEnergyCreator > core::init::ChainbreakEnergyCreator_registrator

static

◆ ChainIsCreator_registrator

ResFilterRegistrator< ChainIsCreator > core::init::ChainIsCreator_registrator

static

◆ ChainIsntCreator_registrator

ResFilterRegistrator< ChainIsntCreator > core::init::ChainIsntCreator_registrator

static

◆ ChemicalShiftAnisotropyEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::ChemicalShiftAnisotropyEnergyCreator > core::init::ChemicalShiftAnisotropyEnergyCreator_registrator

static

◆ ClashBasedRepackShellCreator_registrator

TaskOperationRegistrator< ClashBasedRepackShellCreator > core::init::ClashBasedRepackShellCreator_registrator

static

◆ CompositeSequenceCreator_registrator

SequenceRegistrator< core::sequence::CompositeSequenceCreator > core::init::CompositeSequenceCreator_registrator

static

◆ ConstraintsEnergyCreator_registrator

EnergyMethodRegistrator< scoring::constraints::ConstraintsEnergyCreator > core::init::ConstraintsEnergyCreator_registrator

static

◆ ContactOrderEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::ContactOrderEnergyCreator > core::init::ContactOrderEnergyCreator_registrator

static

◆ ContextDependentGeometricSolEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::ContextDependentGeometricSolEnergyCreator > core::init::ContextDependentGeometricSolEnergyCreator_registrator

static

◆ ContextIndependentGeometricSolEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::ContextIndependentGeometricSolEnergyCreator > core::init::ContextIndependentGeometricSolEnergyCreator_registrator

static

◆ CoordinateConstraintCreator_registrator

ConstraintRegistrator< core::scoring::constraints::CoordinateConstraintCreator > core::init::CoordinateConstraintCreator_registrator

static

◆ CovalentLabelingEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::CovalentLabelingEnergyCreator> core::init::CovalentLabelingEnergyCreator_registrator

static

◆ CovalentLabelingFAEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::CovalentLabelingFAEnergyCreator> core::init::CovalentLabelingFAEnergyCreator_registrator

static

◆ CustomAtomPairEnergy_registrator

EnergyMethodRegistrator< energy_methods::CustomAtomPairEnergyCreator > core::init::CustomAtomPairEnergy_registrator

static

◆ D2H_SA_EnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::D2H_SA_EnergyCreator > core::init::D2H_SA_EnergyCreator_registrator

static

◆ DDPscoreCreator_registrator

EnergyMethodRegistrator< scoring::interface_::DDPscoreCreator > core::init::DDPscoreCreator_registrator

static

◆ DEEREnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::DEEREnergyCreator > core::init::DEEREnergyCreator_registrator

static

◆ DEPC_MS_EnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::DEPC_MS_EnergyCreator > core::init::DEPC_MS_EnergyCreator_registrator

static

◆ DesignRestrictionsCreator_registrator

TaskOperationRegistrator< DesignRestrictionsCreator > core::init::DesignRestrictionsCreator_registrator

static

◆ DFIRE_EnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::dfire::DFIRE_EnergyCreator > core::init::DFIRE_EnergyCreator_registrator

static

◆ DihedralConstraintCreator_registrator

ConstraintRegistrator< core::scoring::constraints::DihedralConstraintCreator > core::init::DihedralConstraintCreator_registrator

static

◆ DihedralPairConstraintCreator_registrator

ConstraintRegistrator< core::scoring::constraints::DihedralPairConstraintCreator > core::init::DihedralPairConstraintCreator_registrator

static

◆ DipolarCouplingEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::DipolarCouplingEnergyCreator > core::init::DipolarCouplingEnergyCreator_registrator

static

◆ DirectReadoutEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::DirectReadoutEnergyCreator > core::init::DirectReadoutEnergyCreator_registrator

static

◆ DisallowIfNonnativeCreator_registrator

TaskOperationRegistrator< DisallowIfNonnativeCreator > core::init::DisallowIfNonnativeCreator_registrator

static

◆ DisallowIfNonnativeRLTCreator_registrator

ResLvlTaskOperationRegistrator< DisallowIfNonnativeRLTCreator > core::init::DisallowIfNonnativeRLTCreator_registrator

static

◆ DistanceChainbreakEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::DistanceChainbreakEnergyCreator > core::init::DistanceChainbreakEnergyCreator_registrator

static

◆ DisulfideMatchingEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::DisulfideMatchingEnergyCreator > core::init::DisulfideMatchingEnergyCreator_registrator

static

◆ DNA_BaseEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::DNA_BaseEnergyCreator > core::init::DNA_BaseEnergyCreator_registrator

static

◆ DNA_DihedralEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::DNA_DihedralEnergyCreator > core::init::DNA_DihedralEnergyCreator_registrator

static

◆ DNAChiEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::DNAChiEnergyCreator > core::init::DNAChiEnergyCreator_registrator

static

◆ DNATorsionEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::DNATorsionEnergyCreator > core::init::DNATorsionEnergyCreator_registrator

static

◆ DumpTrajectoryEnergy_registrator

EnergyMethodRegistrator< energy_methods::DumpTrajectoryEnergyCreator > core::init::DumpTrajectoryEnergy_registrator

static

◆ DunbrackConstraintCreator_registrator

ConstraintRegistrator< core::pack::dunbrack::DunbrackConstraintCreator > core::init::DunbrackConstraintCreator_registrator

static

◆ DunbrackEnergyCreator_registrator

EnergyMethodRegistrator< pack::dunbrack::DunbrackEnergyCreator > core::init::DunbrackEnergyCreator_registrator

static

◆ DunbrackRotamerLibrarySpecificationCreator_registrator

RotamerLibrarySpecificationRegistrator< chemical::rotamers::DunbrackRotamerLibrarySpecificationCreator > core::init::DunbrackRotamerLibrarySpecificationCreator_registrator

static

◆ ElecDensAllAtomCenEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::ElecDensAllAtomCenEnergyCreator > core::init::ElecDensAllAtomCenEnergyCreator_registrator

static

◆ ElecDensAtomwiseEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::ElecDensAtomwiseEnergyCreator > core::init::ElecDensAtomwiseEnergyCreator_registrator

static

◆ ElecDensCenEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::ElecDensCenEnergyCreator > core::init::ElecDensCenEnergyCreator_registrator

static

◆ ElecDensEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::ElecDensEnergyCreator > core::init::ElecDensEnergyCreator_registrator

static

◆ EnableMultiCoolAnnealerCreator_registrator

TaskOperationRegistrator< EnableMultiCoolAnnealerCreator > core::init::EnableMultiCoolAnnealerCreator_registrator

static

◆ EnableSmartAnnealerCreator_registrator

TaskOperationRegistrator< EnableSmartAnnealerCreator > core::init::EnableSmartAnnealerCreator_registrator

static

◆ EnvEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::EnvEnergyCreator > core::init::EnvEnergyCreator_registrator

static

◆ EnvSmoothEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::EnvSmoothEnergyCreator > core::init::EnvSmoothEnergyCreator_registrator

static

◆ EtableClassicIntraEnergyCreator_registrator

EnergyMethodRegistrator< scoring::etable::EtableClassicIntraEnergyCreator > core::init::EtableClassicIntraEnergyCreator_registrator

static

◆ EtableEnergyCreator_registrator

EnergyMethodRegistrator< scoring::etable::EtableEnergyCreator > core::init::EtableEnergyCreator_registrator

static

◆ ExactOccludedHbondSolEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::ExactOccludedHbondSolEnergyCreator > core::init::ExactOccludedHbondSolEnergyCreator_registrator

static

◆ ExtraChiCutoffCreator_registrator

TaskOperationRegistrator< ExtraChiCutoffCreator > core::init::ExtraChiCutoffCreator_registrator

static

◆ ExtraChiCutoffRLTCreator_registrator

ResLvlTaskOperationRegistrator< ExtraChiCutoffRLTCreator > core::init::ExtraChiCutoffRLTCreator_registrator

static

◆ ExtraRotamersCreator_registrator

TaskOperationRegistrator< ExtraRotamersCreator > core::init::ExtraRotamersCreator_registrator

static

◆ ExtraRotamersGenericCreator_registrator

TaskOperationRegistrator< ExtraRotamersGenericCreator > core::init::ExtraRotamersGenericCreator_registrator

static

◆ ExtraRotamersGenericRLTCreator_registrator

ResLvlTaskOperationRegistrator< ExtraRotamersGenericRLTCreator > core::init::ExtraRotamersGenericRLTCreator_registrator

static

◆ FA_ElecEnergyAroAllCreator_registrator

EnergyMethodRegistrator< energy_methods::FA_ElecEnergyAroAllCreator > core::init::FA_ElecEnergyAroAllCreator_registrator

static

◆ FA_ElecEnergyAroAroCreator_registrator

EnergyMethodRegistrator< energy_methods::FA_ElecEnergyAroAroCreator > core::init::FA_ElecEnergyAroAroCreator_registrator

static

◆ FA_ElecEnergyCreator_registrator

EnergyMethodRegistrator< scoring::elec::FA_ElecEnergyCreator > core::init::FA_ElecEnergyCreator_registrator

static

◆ FA_GrpElecEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::FA_GrpElecEnergyCreator > core::init::FA_GrpElecEnergyCreator_registrator

static

◆ Fa_MbenvEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::Fa_MbenvEnergyCreator > core::init::Fa_MbenvEnergyCreator_registrator

static

◆ Fa_MbsolvEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::Fa_MbsolvEnergyCreator > core::init::Fa_MbsolvEnergyCreator_registrator

static

◆ FabConstraintCreator_registrator

ConstraintRegistrator< core::scoring::constraints::FabConstraintCreator > core::init::FabConstraintCreator_registrator

static

◆ FACTSEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::FACTSEnergyCreator > core::init::FACTSEnergyCreator_registrator

static

◆ FaMPAsymEzCBEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::FaMPAsymEzCBEnergyCreator > core::init::FaMPAsymEzCBEnergyCreator_registrator

static

◆ FaMPAsymEzCGEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::FaMPAsymEzCGEnergyCreator > core::init::FaMPAsymEzCGEnergyCreator_registrator

static

◆ FaMPEnvEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::FaMPEnvEnergyCreator > core::init::FaMPEnvEnergyCreator_registrator

static

◆ FaMPEnvSMoothEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::FaMPEnvSmoothEnergyCreator > core::init::FaMPEnvSMoothEnergyCreator_registrator

static

◆ FaMPSolvEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::FaMPSolvEnergyCreator > core::init::FaMPSolvEnergyCreator_registrator

static

◆ FastDensEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::FastDensEnergyCreator > core::init::FastDensEnergyCreator_registrator

static

◆ FastSAXSEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::FastSAXSEnergyCreator > core::init::FastSAXSEnergyCreator_registrator

static

◆ FiberDiffractionEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::FiberDiffractionEnergyCreator > core::init::FiberDiffractionEnergyCreator_registrator

static

◆ FiberDiffractionEnergyDensCreator_registrator

EnergyMethodRegistrator< energy_methods::FiberDiffractionEnergyDensCreator > core::init::FiberDiffractionEnergyDensCreator_registrator

static

◆ FreeDOF_EnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::FreeDOF_EnergyCreator > core::init::FreeDOF_EnergyCreator_registrator

static

◆ FullatomCustomPairDistanceEnergyCreator_registrator

EnergyMethodRegistrator< scoring::custom_pair_distance::FullatomCustomPairDistanceEnergyCreator > core::init::FullatomCustomPairDistanceEnergyCreator_registrator

static

◆ FullatomDisulfideEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::FullatomDisulfideEnergyCreator > core::init::FullatomDisulfideEnergyCreator_registrator

static

◆ GaussianOverlapEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::GaussianOverlapEnergyCreator > core::init::GaussianOverlapEnergyCreator_registrator

static

◆ GenBornEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::GenBornEnergyCreator > core::init::GenBornEnergyCreator_registrator

static

◆ GenericBondedEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::GenericBondedEnergyCreator > core::init::GenericBondedEnergyCreator_registrator

static

◆ GoapEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::GoapEnergyCreator > core::init::GoapEnergyCreator_registrator

static

◆ HackAroEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::HackAroEnergyCreator > core::init::HackAroEnergyCreator_registrator

static

◆ HBNetEnergyCreator_registrator

EnergyMethodRegistrator< pack::guidance_scoreterms::hbnet_energy::HBNetEnergyCreator > core::init::HBNetEnergyCreator_registrator

static

◆ HBondEnergyCreator_registrator

EnergyMethodRegistrator< scoring::hbonds::HBondEnergyCreator > core::init::HBondEnergyCreator_registrator

static

◆ HolesEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::HolesEnergyCreator > core::init::HolesEnergyCreator_registrator

static

◆ HPatchEnergyCreator_registrator

EnergyMethodRegistrator< pack::interaction_graph::HPatchEnergyCreator > core::init::HPatchEnergyCreator_registrator

static

◆ HRF_MSLabelingEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::HRF_MSLabelingEnergyCreator > core::init::HRF_MSLabelingEnergyCreator_registrator

static

◆ HRFDynamicsEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::HRFDynamicsEnergyCreator > core::init::HRFDynamicsEnergyCreator_registrator

static

◆ HybridVDW_EnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::HybridVDW_EnergyCreator > core::init::HybridVDW_EnergyCreator_registrator

static

◆ HydroxylTorsionEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::HydroxylTorsionEnergyCreator > core::init::HydroxylTorsionEnergyCreator_registrator

static

◆ ImplicitMembraneElecEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::ImplicitMembraneElecEnergyCreator > core::init::ImplicitMembraneElecEnergyCreator_registrator

static

◆ IncludeCurrentCreator_registrator

TaskOperationRegistrator< IncludeCurrentCreator > core::init::IncludeCurrentCreator_registrator

static

◆ IncludeCurrentRLTCreator_registrator

ResLvlTaskOperationRegistrator< IncludeCurrentRLTCreator > core::init::IncludeCurrentRLTCreator_registrator

static

◆ InitializeExtraRotsFromCommandlineCreator_registrator

TaskOperationRegistrator< InitializeExtraRotsFromCommandlineCreator > core::init::InitializeExtraRotsFromCommandlineCreator_registrator

static

◆ InitializeFromCommandlineCreator_registrator

TaskOperationRegistrator< InitializeFromCommandlineCreator > core::init::InitializeFromCommandlineCreator_registrator

static

◆ InitializeFromOptionCollectionCreator_registrator

TaskOperationRegistrator< InitializeFromOptionCollectionCreator > core::init::InitializeFromOptionCollectionCreator_registrator

static

◆ IntermolEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::IntermolEnergyCreator > core::init::IntermolEnergyCreator_registrator

static

◆ KeepSequenceSymmetryCreator_registrator

TaskOperationRegistrator< KeepSequenceSymmetryCreator > core::init::KeepSequenceSymmetryCreator_registrator

static

◆ KofNConstraintCreator_registrator

ConstraintRegistrator< core::scoring::constraints::KofNConstraintCreator > core::init::KofNConstraintCreator_registrator

static

◆ LinearBranchEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::LinearBranchEnergyCreator > core::init::LinearBranchEnergyCreator_registrator

static

◆ LinearChainbreakEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::LinearChainbreakEnergyCreator > core::init::LinearChainbreakEnergyCreator_registrator

static

◆ LK_BallEnergyCreator_registrator

EnergyMethodRegistrator< scoring::lkball::LK_BallEnergyCreator > core::init::LK_BallEnergyCreator_registrator

static

◆ LK_DomeEnergyCreator_registrator

EnergyMethodRegistrator< scoring::lkball::LK_DomeEnergyCreator > core::init::LK_DomeEnergyCreator_registrator

static

◆ LK_DomePackEnergyCreator_registrator

EnergyMethodRegistrator< pack::guidance_scoreterms::lk_dome::LK_DomePackEnergyCreator > core::init::LK_DomePackEnergyCreator_registrator

static

◆ LK_hackCreator_registrator

EnergyMethodRegistrator< energy_methods::LK_hackCreator > core::init::LK_hackCreator_registrator

static

◆ LK_PolarNonPolarEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::LK_PolarNonPolarEnergyCreator > core::init::LK_PolarNonPolarEnergyCreator_registrator

static

◆ LocalCoordinateConstraintCreator_registrator

ConstraintRegistrator< core::scoring::constraints::LocalCoordinateConstraintCreator > core::init::LocalCoordinateConstraintCreator_registrator

static

◆ LoopCloseEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::LoopCloseEnergyCreator > core::init::LoopCloseEnergyCreator_registrator

static

◆ MembraneCbetaEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::MembraneCbetaEnergyCreator > core::init::MembraneCbetaEnergyCreator_registrator

static

◆ MembraneCenPairEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::MembraneCenPairEnergyCreator > core::init::MembraneCenPairEnergyCreator_registrator

static

◆ MembraneEnvEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::MembraneEnvEnergyCreator > core::init::MembraneEnvEnergyCreator_registrator

static

◆ MembraneEnvPenaltiesCreator_registrator

EnergyMethodRegistrator< energy_methods::MembraneEnvPenaltiesCreator > core::init::MembraneEnvPenaltiesCreator_registrator

static

◆ MembraneEnvSmoothEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::MembraneEnvSmoothEnergyCreator > core::init::MembraneEnvSmoothEnergyCreator_registrator

static

◆ MembraneLipoCreator_registrator

EnergyMethodRegistrator< energy_methods::MembraneLipoCreator > core::init::MembraneLipoCreator_registrator

static

◆ MgEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::MgEnergyCreator > core::init::MgEnergyCreator_registrator

static

◆ MHCEpitopeEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::MHCEpitopeEnergyCreator > core::init::MHCEpitopeEnergyCreator_registrator

static

◆ MissingEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::MissingEnergyCreator > core::init::MissingEnergyCreator_registrator

static

◆ MMBondAngleEnergyCreator_registrator

EnergyMethodRegistrator< scoring::methods::MMBondAngleEnergyCreator > core::init::MMBondAngleEnergyCreator_registrator

static

◆ MMBondLengthEnergyCreator_registrator

EnergyMethodRegistrator< scoring::methods::MMBondLengthEnergyCreator > core::init::MMBondLengthEnergyCreator_registrator

static

◆ MMLJEnergyInterCreator_registrator

EnergyMethodRegistrator< scoring::methods::MMLJEnergyInterCreator > core::init::MMLJEnergyInterCreator_registrator

static

◆ MMLJEnergyIntraCreator_registrator

EnergyMethodRegistrator< scoring::methods::MMLJEnergyIntraCreator > core::init::MMLJEnergyIntraCreator_registrator

static

◆ MMTorsionEnergyCreator_registrator

EnergyMethodRegistrator< scoring::methods::MMTorsionEnergyCreator > core::init::MMTorsionEnergyCreator_registrator

static

◆ MotifDockEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::MotifDockEnergyCreator > core::init::MotifDockEnergyCreator_registrator

static

◆ MPCbetaEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::MPCbetaEnergyCreator > core::init::MPCbetaEnergyCreator_registrator

static

◆ MPEnvEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::MPEnvEnergyCreator > core::init::MPEnvEnergyCreator_registrator

static

◆ MPHelicalityEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::MPHelicalityEnergyCreator > core::init::MPHelicalityEnergyCreator_registrator

static

◆ MPNonHelixPenaltyCreator_registrator

EnergyMethodRegistrator< scoring::membrane::MPNonHelixPenaltyCreator > core::init::MPNonHelixPenaltyCreator_registrator

static

◆ MPPairEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::MPPairEnergyCreator > core::init::MPPairEnergyCreator_registrator

static

◆ MPResidueLipophilicityEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::MPResidueLipophilicityEnergyCreator > core::init::MPResidueLipophilicityEnergyCreator_registrator

static

◆ MPSpanAngleEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::MPSpanAngleEnergyCreator > core::init::MPSpanAngleEnergyCreator_registrator

static

◆ MPSpanInsertionEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::MPSpanInsertionEnergyCreator > core::init::MPSpanInsertionEnergyCreator_registrator

static

◆ MPTerminiPenaltyCreator_registrator

EnergyMethodRegistrator< scoring::membrane::MPTerminiPenaltyCreator > core::init::MPTerminiPenaltyCreator_registrator

static

◆ MPTMProjPenaltyCreator_registrator

EnergyMethodRegistrator< scoring::membrane::MPTMProjPenaltyCreator > core::init::MPTMProjPenaltyCreator_registrator

static

◆ MultiConstraintCreator_registrator

ConstraintRegistrator< core::scoring::constraints::MultiConstraintCreator > core::init::MultiConstraintCreator_registrator

static

◆ MultipoleElecEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::MultipoleElecEnergyCreator > core::init::MultipoleElecEnergyCreator_registrator

static

◆ NA_ChemicalShiftEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::RNA_ChemicalShiftEnergyCreator > core::init::NA_ChemicalShiftEnergyCreator_registrator

static

◆ NamedAngleConstraintCreator_registrator

ConstraintRegistrator< core::scoring::constraints::NamedAngleConstraintCreator > core::init::NamedAngleConstraintCreator_registrator

static

◆ NamedAtomPairConstraintCreator_registrator

ConstraintRegistrator< core::scoring::constraints::NamedAtomPairConstraintCreator > core::init::NamedAtomPairConstraintCreator_registrator

static

◆ NCAARotamerLibrarySpecificationCreator_registrator

RotamerLibrarySpecificationRegistrator< chemical::rotamers::NCAARotamerLibrarySpecificationCreator > core::init::NCAARotamerLibrarySpecificationCreator_registrator

static

◆ NetChargeEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::NetChargeEnergyCreator > core::init::NetChargeEnergyCreator_registrator

static

◆ NMerPSSMEnergyCreator_registrator

EnergyMethodRegistrator< core::scoring::methods::NMerPSSMEnergyCreator > core::init::NMerPSSMEnergyCreator_registrator

static

◆ NMerRefEnergyCreator_registrator

EnergyMethodRegistrator< core::scoring::methods::NMerRefEnergyCreator > core::init::NMerRefEnergyCreator_registrator

static

◆ NMerSVMEnergyCreator_registrator

EnergyMethodRegistrator< core::scoring::methods::NMerSVMEnergyCreator > core::init::NMerSVMEnergyCreator_registrator

static

◆ NoRepackDisulfidesCreator_registrator

TaskOperationRegistrator< NoRepackDisulfidesCreator > core::init::NoRepackDisulfidesCreator_registrator

static

◆ NoResFilterCreator_registrator

ResFilterRegistrator< NoResFilterCreator > core::init::NoResFilterCreator_registrator

static

◆ NPDHBondEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::NPDHBondEnergyCreator > core::init::NPDHBondEnergyCreator_registrator

static

◆ NVscoreCreator_registrator

EnergyMethodRegistrator< scoring::nv::NVscoreCreator > core::init::NVscoreCreator_registrator

static

◆ OccludedHbondSolEnergy_onebodyCreator_registrator

EnergyMethodRegistrator< energy_methods::OccludedHbondSolEnergy_onebodyCreator > core::init::OccludedHbondSolEnergy_onebodyCreator_registrator

static

◆ OccludedHbondSolEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::OccludedHbondSolEnergyCreator > core::init::OccludedHbondSolEnergyCreator_registrator

static

◆ OmegaTetherEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::OmegaTetherEnergyCreator > core::init::OmegaTetherEnergyCreator_registrator

static

◆ OperateOnCertainResiduesCreator_registrator

TaskOperationRegistrator< OperateOnCertainResiduesCreator > core::init::OperateOnCertainResiduesCreator_registrator

static

◆ OperateOnResidueSubsetCreator_registrator

TaskOperationRegistrator< OperateOnResidueSubsetCreator > core::init::OperateOnResidueSubsetCreator_registrator

static

◆ OptCysHGCreator_registrator

TaskOperationRegistrator< OptCysHGCreator > core::init::OptCysHGCreator_registrator

static

◆ OptHCreator_registrator

TaskOperationRegistrator< OptHCreator > core::init::OptHCreator_registrator

static

◆ OrbitalsScoreCreator_registrator

EnergyMethodRegistrator< scoring::orbitals::OrbitalsScoreCreator > core::init::OrbitalsScoreCreator_registrator

static

◆ OtherPoseEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::OtherPoseEnergyCreator > core::init::OtherPoseEnergyCreator_registrator

static

◆ P_AA_EnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::P_AA_EnergyCreator > core::init::P_AA_EnergyCreator_registrator

static

◆ P_AA_pp_EnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::P_AA_pp_EnergyCreator > core::init::P_AA_pp_EnergyCreator_registrator

static

◆ P_AA_ss_EnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::P_AA_ss_EnergyCreator > core::init::P_AA_ss_EnergyCreator_registrator

static

◆ PackStatEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::PackStatEnergyCreator > core::init::PackStatEnergyCreator_registrator

static

◆ PairEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::PairEnergyCreator > core::init::PairEnergyCreator_registrator

static

◆ PDBRotamerLibrarySpecificationCreator_registrator

RotamerLibrarySpecificationRegistrator< chemical::rotamers::PDBRotamerLibrarySpecificationCreator > core::init::PDBRotamerLibrarySpecificationCreator_registrator

static

◆ PDBSilentStructCreator_registrator

SilentStructRegistrator< core::import_pose::PDBSilentStructCreator > core::init::PDBSilentStructCreator_registrator

static

◆ PeptideBondEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::PeptideBondEnergyCreator > core::init::PeptideBondEnergyCreator_registrator

static

◆ pHEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::pHEnergyCreator > core::init::pHEnergyCreator_registrator

static

◆ PointWaterEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::PointWaterEnergyCreator > core::init::PointWaterEnergyCreator_registrator

static

◆ PoissonBoltzmannEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::PoissonBoltzmannEnergyCreator > core::init::PoissonBoltzmannEnergyCreator_registrator

static

◆ PoseResourceLoaderCreator_registrator

ResourceLoaderRegistrator< core::import_pose::PoseResourceLoaderCreator > core::init::PoseResourceLoaderCreator_registrator

static

◆ PreserveCBetaCreator_registrator

TaskOperationRegistrator< PreserveCBetaCreator > core::init::PreserveCBetaCreator_registrator

static

◆ PreserveCBetaRLTCreator_registrator

ResLvlTaskOperationRegistrator< PreserveCBetaRLTCreator > core::init::PreserveCBetaRLTCreator_registrator

static

◆ PreventRepackingCreator_registrator

TaskOperationRegistrator< PreventRepackingCreator > core::init::PreventRepackingCreator_registrator

static

◆ PreventRepackingRLTCreator_registrator

ResLvlTaskOperationRegistrator< PreventRepackingRLTCreator > core::init::PreventRepackingRLTCreator_registrator

static

◆ ProClosureEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::ProClosureEnergyCreator > core::init::ProClosureEnergyCreator_registrator

static

◆ ProhibitResiduePropertiesCreator_registrator

TaskOperationRegistrator< ProhibitResiduePropertiesCreator > core::init::ProhibitResiduePropertiesCreator_registrator

static

◆ ProhibitSpecifiedBaseResidueTypesCreator_registrator

TaskOperationRegistrator< ProhibitSpecifiedBaseResidueTypesCreator > core::init::ProhibitSpecifiedBaseResidueTypesCreator_registrator

static

◆ ProQ_EnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::ProQ_EnergyCreator > core::init::ProQ_EnergyCreator_registrator

static

◆ ProteinSilentStruct_SinglePrecCreator_registrator

SilentStructRegistrator< core::io::silent::ProteinSilentStruct_SinglePrecCreator > core::init::ProteinSilentStruct_SinglePrecCreator_registrator

static

◆ ProteinSilentStructCreator_registrator

SilentStructRegistrator< core::io::silent::ProteinSilentStructCreator > core::init::ProteinSilentStructCreator_registrator

static

◆ RamachandranEnergy2BCreator_registrator

EnergyMethodRegistrator< energy_methods::RamachandranEnergy2BCreator > core::init::RamachandranEnergy2BCreator_registrator

static

◆ RamachandranEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::RamachandranEnergyCreator > core::init::RamachandranEnergyCreator_registrator

static

◆ RamaPreProEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::RamaPreProEnergyCreator > core::init::RamaPreProEnergyCreator_registrator

static

◆ ReadResfileAndObeyLengthEventsCreator_registrator

TaskOperationRegistrator< ReadResfileAndObeyLengthEventsCreator > core::init::ReadResfileAndObeyLengthEventsCreator_registrator

static

◆ ReadResfileCreator_registrator

TaskOperationRegistrator< ReadResfileCreator > core::init::ReadResfileCreator_registrator

static

◆ ReferenceEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::ReferenceEnergyCreator > core::init::ReferenceEnergyCreator_registrator

static

◆ ReferenceEnergyNoncanonicalCreator_registrator

EnergyMethodRegistrator< energy_methods::ReferenceEnergyNoncanonicalCreator > core::init::ReferenceEnergyNoncanonicalCreator_registrator

static

◆ reg_AndJumpSelectorCreator

JumpSelectorRegistrator< AndJumpSelectorCreator > core::init::reg_AndJumpSelectorCreator

static

◆ reg_AndResidueSelectorCreator

ResidueSelectorRegistrator< AndResidueSelectorCreator > core::init::reg_AndResidueSelectorCreator

static

◆ reg_AsymmetricUnitSelectorCreator

ResidueSelectorRegistrator< AsymmetricUnitSelectorCreator > core::init::reg_AsymmetricUnitSelectorCreator

static

◆ reg_BfactorSelectorCreator

ResidueSelectorRegistrator< BFactorSelectorCreator > core::init::reg_BfactorSelectorCreator

static

◆ reg_BinSelectorCreator

ResidueSelectorRegistrator< BinSelectorCreator > core::init::reg_BinSelectorCreator

static

◆ reg_BondedResidueSelectorCreator

ResidueSelectorRegistrator< BondedResidueSelectorCreator > core::init::reg_BondedResidueSelectorCreator

static

◆ reg_ChainSelectorCreator

ResidueSelectorRegistrator< ChainSelectorCreator > core::init::reg_ChainSelectorCreator

static

◆ reg_ClashBasedShellSelectorCreator

ResidueSelectorRegistrator< core::pack::task::residue_selector::ClashBasedShellSelectorCreator > core::init::reg_ClashBasedShellSelectorCreator

static

◆ reg_CloseContactResidueSelectorCreator

ResidueSelectorRegistrator< CloseContactResidueSelectorCreator > core::init::reg_CloseContactResidueSelectorCreator

static

◆ reg_CustomBaseTypePackerPaletteCreator

PackerPaletteRegistrator< CustomBaseTypePackerPaletteCreator > core::init::reg_CustomBaseTypePackerPaletteCreator

static

◆ reg_DefaultPackerPaletteCreator

PackerPaletteRegistrator< DefaultPackerPaletteCreator > core::init::reg_DefaultPackerPaletteCreator

static

◆ reg_DensityFitResidueSelectorCreator

ResidueSelectorRegistrator< DensityFitResidueSelectorCreator > core::init::reg_DensityFitResidueSelectorCreator

static

◆ reg_ExclusivelySharedJumpSelectorCreator

JumpSelectorRegistrator< ExclusivelySharedJumpSelectorCreator > core::init::reg_ExclusivelySharedJumpSelectorCreator

static

◆ reg_FalseResidueSelectorCreator

ResidueSelectorRegistrator< FalseResidueSelectorCreator > core::init::reg_FalseResidueSelectorCreator

static

◆ reg_GlycanLayerSelectorCreator

ResidueSelectorRegistrator< GlycanLayerSelectorCreator > core::init::reg_GlycanLayerSelectorCreator

static

◆ reg_GlycanResidueSelectorCreator

ResidueSelectorRegistrator< GlycanResidueSelectorCreator > core::init::reg_GlycanResidueSelectorCreator

static

◆ reg_GlycanSequonsSelectorCreator

ResidueSelectorRegistrator< GlycanSequonsSelectorCreator > core::init::reg_GlycanSequonsSelectorCreator

static

◆ reg_InterchainJumpSelectorCreator

JumpSelectorRegistrator< InterchainJumpSelectorCreator > core::init::reg_InterchainJumpSelectorCreator

static

◆ reg_InterGroupInterfaceByVectorSelectorCreator

ResidueSelectorRegistrator< InterGroupInterfaceByVectorSelectorCreator > core::init::reg_InterGroupInterfaceByVectorSelectorCreator

static

◆ reg_JumpDownstreamSelectorCreator

ResidueSelectorRegistrator< JumpDownstreamSelectorCreator > core::init::reg_JumpDownstreamSelectorCreator

static

◆ reg_JumpForResidueCreator

JumpSelectorRegistrator< JumpForResidueCreator > core::init::reg_JumpForResidueCreator

static

◆ reg_JumpIndexSelectorCreator

JumpSelectorRegistrator< JumpIndexSelectorCreator > core::init::reg_JumpIndexSelectorCreator

static

◆ reg_JumpUpstreamSelectorCreator

ResidueSelectorRegistrator< JumpUpstreamSelectorCreator > core::init::reg_JumpUpstreamSelectorCreator

static

◆ reg_LayerSelectorCreator

ResidueSelectorRegistrator< LayerSelectorCreator > core::init::reg_LayerSelectorCreator

static

◆ reg_LogicResidueSelectorCreator

ResidueSelectorRegistrator< LogicResidueSelectorCreator > core::init::reg_LogicResidueSelectorCreator

static

◆ reg_NeighborhoodResidueSelectorCreator

ResidueSelectorRegistrator< NeighborhoodResidueSelectorCreator > core::init::reg_NeighborhoodResidueSelectorCreator

static

◆ reg_NoDesignPackerPaletteCreator

PackerPaletteRegistrator< NoDesignPackerPaletteCreator > core::init::reg_NoDesignPackerPaletteCreator

static

◆ reg_NotJumpSelectorCreator

JumpSelectorRegistrator< NotJumpSelectorCreator > core::init::reg_NotJumpSelectorCreator

static

◆ reg_NotResidueSelectorCreator

ResidueSelectorRegistrator< NotResidueSelectorCreator > core::init::reg_NotResidueSelectorCreator

static

◆ reg_NumNeighborsSelectorCreator

ResidueSelectorRegistrator< NumNeighborsSelectorCreator > core::init::reg_NumNeighborsSelectorCreator

static

◆ reg_OrJumpSelectorCreator

JumpSelectorRegistrator< OrJumpSelectorCreator > core::init::reg_OrJumpSelectorCreator

static

◆ reg_OrResidueSelectorCreator

ResidueSelectorRegistrator< OrResidueSelectorCreator > core::init::reg_OrResidueSelectorCreator

static

◆ reg_PhiSelectorCreator

ResidueSelectorRegistrator< PhiSelectorCreator > core::init::reg_PhiSelectorCreator

static

◆ reg_PrimarySequenceNeighborhoodSelectorCreator

ResidueSelectorRegistrator< PrimarySequenceNeighborhoodSelectorCreator > core::init::reg_PrimarySequenceNeighborhoodSelectorCreator

static

◆ reg_RandomGlycanFoliageSelectorCreator

ResidueSelectorRegistrator< RandomGlycanFoliageSelectorCreator > core::init::reg_RandomGlycanFoliageSelectorCreator

static

◆ reg_RandomResidueSelectorCreator

ResidueSelectorRegistrator< RandomResidueSelectorCreator > core::init::reg_RandomResidueSelectorCreator

static

◆ reg_ResidueIndexSelectorCreator

ResidueSelectorRegistrator< ResidueIndexSelectorCreator > core::init::reg_ResidueIndexSelectorCreator

static

◆ reg_ResidueInMembraneSelectorCreator

ResidueSelectorRegistrator< ResidueInMembraneSelectorCreator > core::init::reg_ResidueInMembraneSelectorCreator

static

◆ reg_ResidueInSequenceMotifSelectorCreator

ResidueSelectorRegistrator< ResidueInSequenceMotifSelectorCreator > core::init::reg_ResidueInSequenceMotifSelectorCreator

static

◆ reg_ResidueNameSelectorCreator

ResidueSelectorRegistrator< ResidueNameSelectorCreator > core::init::reg_ResidueNameSelectorCreator

static

◆ reg_ResiduePDBInfoHasLabelSelectorCreator

ResidueSelectorRegistrator< ResiduePDBInfoHasLabelSelectorCreator > core::init::reg_ResiduePDBInfoHasLabelSelectorCreator

static

◆ reg_ResiduePropertySelectorCreator

ResidueSelectorRegistrator< ResiduePropertySelectorCreator > core::init::reg_ResiduePropertySelectorCreator

static

◆ reg_ResidueSpanSelectorCreator

ResidueSelectorRegistrator< ResidueSpanSelectorCreator > core::init::reg_ResidueSpanSelectorCreator

static

◆ reg_ScoreTermValueBasedSelectorCreator

ResidueSelectorRegistrator< ScoreTermValueBasedSelectorCreator > core::init::reg_ScoreTermValueBasedSelectorCreator

static

◆ reg_SecondaryStructureSelectorCreator

ResidueSelectorRegistrator< SecondaryStructureSelectorCreator > core::init::reg_SecondaryStructureSelectorCreator

static

◆ reg_SimpleMetricSelectorCreator

ResidueSelectorRegistrator< SimpleMetricSelectorCreator > core::init::reg_SimpleMetricSelectorCreator

static

◆ reg_SliceResidueSelectorCreator

ResidueSelectorRegistrator< SliceResidueSelectorCreator > core::init::reg_SliceResidueSelectorCreator

static

◆ reg_SSElementSelectorCreator

ResidueSelectorRegistrator< SSElementSelectorCreator > core::init::reg_SSElementSelectorCreator

static

◆ reg_SymmetricalResidueSelectorCreator

ResidueSelectorRegistrator< SymmetricalResidueSelectorCreator > core::init::reg_SymmetricalResidueSelectorCreator

static

◆ reg_TrueResidueSelectorCreator

ResidueSelectorRegistrator< TrueResidueSelectorCreator > core::init::reg_TrueResidueSelectorCreator

static

◆ ResidualDipolarCouplingEnergy_RohlCreator_registrator

EnergyMethodRegistrator< energy_methods::ResidualDipolarCouplingEnergy_RohlCreator > core::init::ResidualDipolarCouplingEnergy_RohlCreator_registrator

static

◆ ResidualDipolarCouplingEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::ResidualDipolarCouplingEnergyCreator > core::init::ResidualDipolarCouplingEnergyCreator_registrator

static

◆ ResidueHasPropertyCreator_registrator

ResFilterRegistrator< ResidueHasPropertyCreator > core::init::ResidueHasPropertyCreator_registrator

static

◆ ResidueIndexIsCreator_registrator

ResFilterRegistrator< ResidueIndexIsCreator > core::init::ResidueIndexIsCreator_registrator

static

◆ ResidueIndexIsntCreator_registrator

ResFilterRegistrator< ResidueIndexIsntCreator > core::init::ResidueIndexIsntCreator_registrator

static

◆ ResidueLacksPropertyCreator_registrator

ResFilterRegistrator< ResidueLacksPropertyCreator > core::init::ResidueLacksPropertyCreator_registrator

static

◆ ResidueName3IsCreator_registrator

ResFilterRegistrator< ResidueName3IsCreator > core::init::ResidueName3IsCreator_registrator

static

◆ ResidueName3IsntCreator_registrator

ResFilterRegistrator< ResidueName3IsntCreator > core::init::ResidueName3IsntCreator_registrator

static

◆ ResiduePDBInfoHasLabelCreator_registrator

ResFilterRegistrator< ResiduePDBInfoHasLabelCreator > core::init::ResiduePDBInfoHasLabelCreator_registrator

static

◆ ResidueTypeResFilterCreator_registrator

ResFilterRegistrator< ResidueTypeFilterCreator > core::init::ResidueTypeResFilterCreator_registrator

static

◆ restore_sc12_settings

pre_talaris_2013_behavior_settings const core::init::restore_sc12_settings

Referenced by revert_to_pre_talaris_2013_defaults().

◆ RestrictAbsentCanonicalAASCreator_registrator

TaskOperationRegistrator< RestrictAbsentCanonicalAASCreator > core::init::RestrictAbsentCanonicalAASCreator_registrator

static

◆ RestrictAbsentCanonicalAASExceptNativeRLTCreator_registrator

ResLvlTaskOperationRegistrator< RestrictAbsentCanonicalAASExceptNativeRLTCreator > core::init::RestrictAbsentCanonicalAASExceptNativeRLTCreator_registrator

static

◆ RestrictAbsentCanonicalAASRLTCreator_registrator

ResLvlTaskOperationRegistrator< RestrictAbsentCanonicalAASRLTCreator > core::init::RestrictAbsentCanonicalAASRLTCreator_registrator

static

◆ RestrictInteractionGraphThreadsOperationCreator_registrator

TaskOperationRegistrator< RestrictInteractionGraphThreadsOperationCreator > core::init::RestrictInteractionGraphThreadsOperationCreator_registrator

static

◆ RestrictResidueToRepackingCreator_registrator

TaskOperationRegistrator< RestrictResidueToRepackingCreator > core::init::RestrictResidueToRepackingCreator_registrator

static

◆ RestrictToRepackingCreator_registrator

TaskOperationRegistrator< RestrictToRepackingCreator > core::init::RestrictToRepackingCreator_registrator

static

◆ RestrictToRepackingRLTCreator_registrator

ResLvlTaskOperationRegistrator< RestrictToRepackingRLTCreator > core::init::RestrictToRepackingRLTCreator_registrator

static

◆ RestrictToResiduePropertiesCreator_registrator

TaskOperationRegistrator< RestrictToResiduePropertiesCreator > core::init::RestrictToResiduePropertiesCreator_registrator

static

◆ RestrictToSpecifiedBaseResidueTypesCreator_registrator

TaskOperationRegistrator< RestrictToSpecifiedBaseResidueTypesCreator > core::init::RestrictToSpecifiedBaseResidueTypesCreator_registrator

static

◆ RestrictYSDesignCreator_registrator

TaskOperationRegistrator< RestrictYSDesignCreator > core::init::RestrictYSDesignCreator_registrator

static

◆ RG_Energy_FastCreator_registrator

EnergyMethodRegistrator< energy_methods::RG_Energy_FastCreator > core::init::RG_Energy_FastCreator_registrator

static

◆ RG_Energy_RNACreator_registrator

EnergyMethodRegistrator< energy_methods::RG_Energy_RNACreator > core::init::RG_Energy_RNACreator_registrator

static

◆ RG_LocalEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::RG_LocalEnergyCreator > core::init::RG_LocalEnergyCreator_registrator

static

◆ RigidBodySilentStructCreator_registrator

SilentStructRegistrator< core::io::silent::RigidBodySilentStructCreator > core::init::RigidBodySilentStructCreator_registrator

static

◆ RingClosureEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::RingClosureEnergyCreator > core::init::RingClosureEnergyCreator_registrator

static

◆ RMS_EnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::RMS_EnergyCreator > core::init::RMS_EnergyCreator_registrator

static

◆ RNA_BulgeEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::RNA_BulgeEnergyCreator > core::init::RNA_BulgeEnergyCreator_registrator

static

◆ RNA_ChemicalMappingEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::RNA_ChemicalMappingEnergyCreator > core::init::RNA_ChemicalMappingEnergyCreator_registrator

static

◆ RNA_CoarseDistEnergyCreator_registrator

EnergyMethodRegistrator< core::energy_methods::RNA_CoarseDistEnergyCreator > core::init::RNA_CoarseDistEnergyCreator_registrator

static

◆ RNA_DataBackboneEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::RNA_DataBackboneEnergyCreator > core::init::RNA_DataBackboneEnergyCreator_registrator

static

◆ RNA_FA_ElecEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::RNA_FA_ElecEnergyCreator > core::init::RNA_FA_ElecEnergyCreator_registrator

static

◆ RNA_FullAtomStackingEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::RNA_FullAtomStackingEnergyCreator > core::init::RNA_FullAtomStackingEnergyCreator_registrator

static

◆ RNA_FullAtomVDW_BasePhosphateCreator_registrator

EnergyMethodRegistrator< energy_methods::RNA_FullAtomVDW_BasePhosphateCreator > core::init::RNA_FullAtomVDW_BasePhosphateCreator_registrator

static

◆ RNA_JR_SuiteEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::RNA_JR_SuiteEnergyCreator > core::init::RNA_JR_SuiteEnergyCreator_registrator

static

◆ RNA_LJ_BaseEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::RNA_LJ_BaseEnergyCreator > core::init::RNA_LJ_BaseEnergyCreator_registrator

static

◆ RNA_MgPointEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::RNA_MgPointEnergyCreator > core::init::RNA_MgPointEnergyCreator_registrator

static

◆ RNA_PairwiseLowResolutionEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::RNA_PairwiseLowResolutionEnergyCreator > core::init::RNA_PairwiseLowResolutionEnergyCreator_registrator

static

◆ RNA_PartitionEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::RNA_PartitionEnergyCreator > core::init::RNA_PartitionEnergyCreator_registrator

static

◆ RNA_SilentStructCreator_registrator

SilentStructRegistrator< core::io::silent::RNA_SilentStructCreator > core::init::RNA_SilentStructCreator_registrator

static

◆ RNA_StubCoordinateEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::RNA_StubCoordinateEnergyCreator > core::init::RNA_StubCoordinateEnergyCreator_registrator

static

◆ RNA_SugarCloseEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::RNA_SugarCloseEnergyCreator > core::init::RNA_SugarCloseEnergyCreator_registrator

static

◆ RNA_SuiteEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::RNA_SuiteEnergyCreator > core::init::RNA_SuiteEnergyCreator_registrator

static

◆ RNA_TorsionEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::RNA_TorsionEnergyCreator > core::init::RNA_TorsionEnergyCreator_registrator

static

◆ RNA_VDW_EnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::RNA_VDW_EnergyCreator > core::init::RNA_VDW_EnergyCreator_registrator

static

◆ RNP_LowResEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::RNP_LowResEnergyCreator > core::init::RNP_LowResEnergyCreator_registrator

static

◆ RNP_LowResPairDistEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::RNP_LowResPairDistEnergyCreator > core::init::RNP_LowResPairDistEnergyCreator_registrator

static

◆ RNP_LowResStackEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::RNP_LowResStackEnergyCreator > core::init::RNP_LowResStackEnergyCreator_registrator

static

◆ RotamerExplosionCreator_registrator

TaskOperationRegistrator< RotamerExplosionCreator > core::init::RotamerExplosionCreator_registrator

static

◆ SA_EnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::SA_EnergyCreator > core::init::SA_EnergyCreator_registrator

static

◆ SapConstraintEnergyCreator_registrator

EnergyMethodRegistrator< pack::guidance_scoreterms::sap::SapConstraintEnergyCreator > core::init::SapConstraintEnergyCreator_registrator

static

◆ SASAEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::SASAEnergyCreator > core::init::SASAEnergyCreator_registrator

static

◆ SAXSEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::SAXSEnergyCreator > core::init::SAXSEnergyCreator_registrator

static

◆ SAXSEnergyCreatorCEN_registrator

EnergyMethodRegistrator< energy_methods::SAXSEnergyCreatorCEN > core::init::SAXSEnergyCreatorCEN_registrator

static

◆ SAXSEnergyCreatorFA_registrator

EnergyMethodRegistrator< energy_methods::SAXSEnergyCreatorFA > core::init::SAXSEnergyCreatorFA_registrator

static

◆ ScoreFileSilentStructCreator_registrator

SilentStructRegistrator< core::io::silent::ScoreFileSilentStructCreator > core::init::ScoreFileSilentStructCreator_registrator

static

◆ ScoreJumpFileSilentStructCreator_registrator

SilentStructRegistrator< core::io::silent::ScoreJumpFileSilentStructCreator > core::init::ScoreJumpFileSilentStructCreator_registrator

static

◆ SecondaryStructureEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::SecondaryStructureEnergyCreator > core::init::SecondaryStructureEnergyCreator_registrator

static

◆ SequenceCouplingCreator_registrator

SequenceRegistrator< core::sequence::SequenceCouplingCreator > core::init::SequenceCouplingCreator_registrator

static

◆ SequenceProfileConstraintCreator_registrator

ConstraintRegistrator< core::scoring::constraints::SequenceProfileConstraintCreator > core::init::SequenceProfileConstraintCreator_registrator

static

◆ SequenceProfileCreator_registrator

SequenceRegistrator< core::sequence::SequenceProfileCreator > core::init::SequenceProfileCreator_registrator

static

◆ SetRotamerCouplingsCreator_registrator

TaskOperationRegistrator< SetRotamerCouplingsCreator > core::init::SetRotamerCouplingsCreator_registrator

static

◆ SetRotamerLinksCreator_registrator

TaskOperationRegistrator< SetRotamerLinksCreator > core::init::SetRotamerLinksCreator_registrator

static

◆ SimpleSequenceCreator_registrator

SequenceRegistrator< core::sequence::SimpleSequenceCreator > core::init::SimpleSequenceCreator_registrator

static

◆ SingleBasicRotamerLibraryCreator_registrator

SingleResidueRotamerLibraryRegistrator< pack::rotamers::SingleBasicRotamerLibraryCreator > core::init::SingleBasicRotamerLibraryCreator_registrator

static

◆ SingleCenrotRotamerLibraryCreator_registrator

SingleResidueRotamerLibraryRegistrator< pack::dunbrack::cenrot::SingleResidueCenrotLibraryCreator > core::init::SingleCenrotRotamerLibraryCreator_registrator

static

◆ SingleLigandRotamerLibraryCreator_registrator

SingleResidueRotamerLibraryRegistrator< pack::rotamers::SingleLigandRotamerLibraryCreator > core::init::SingleLigandRotamerLibraryCreator_registrator

static

◆ SingleNCAARotamerLibraryCreator_registrator

SingleResidueRotamerLibraryRegistrator< pack::rotamers::SingleNCAARotamerLibraryCreator > core::init::SingleNCAARotamerLibraryCreator_registrator

static

◆ SingleResidueDunbrackLibraryCreator_registrator

SingleResidueRotamerLibraryRegistrator< pack::dunbrack::SingleResidueDunbrackLibraryCreator > core::init::SingleResidueDunbrackLibraryCreator_registrator

static

◆ SiteConstraintCreator_registrator

ConstraintRegistrator< core::scoring::constraints::SiteConstraintCreator > core::init::SiteConstraintCreator_registrator

static

◆ SiteConstraintResiduesCreator_registrator

ConstraintRegistrator< core::scoring::constraints::SiteConstraintResiduesCreator > core::init::SiteConstraintResiduesCreator_registrator

static

◆ SmoothCenPairEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::SmoothCenPairEnergyCreator > core::init::SmoothCenPairEnergyCreator_registrator

static

◆ SmoothEnvEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::SmoothEnvEnergyCreator > core::init::SmoothEnvEnergyCreator_registrator

static

◆ SplitUnfoldedTwoBodyEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::SplitUnfoldedTwoBodyEnergyCreator > core::init::SplitUnfoldedTwoBodyEnergyCreator_registrator

static

◆ SSElementMotifContactEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::SSElementMotifContactEnergyCreator > core::init::SSElementMotifContactEnergyCreator_registrator

static

◆ StackElecEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::StackElecEnergyCreator > core::init::StackElecEnergyCreator_registrator

static

◆ StoredRotamerLibraryCreator_registrator

SingleResidueRotamerLibraryRegistrator< pack::rotamers::StoredRotamerLibraryCreator > core::init::StoredRotamerLibraryCreator_registrator

static

◆ SuckerEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::SuckerEnergyCreator > core::init::SuckerEnergyCreator_registrator

static

◆ SugarBackboneEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::SugarBackboneEnergyCreator > core::init::SugarBackboneEnergyCreator_registrator

static

◆ SurfaceEnergyCreator_registrator

EnergyMethodRegistrator< pack::interaction_graph::SurfaceEnergyCreator > core::init::SurfaceEnergyCreator_registrator

static

◆ SurfEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::SurfEnergyCreator > core::init::SurfEnergyCreator_registrator

static

◆ SurfVolEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::SurfVolEnergyCreator > core::init::SurfVolEnergyCreator_registrator

static

◆ symECreator_registrator

EnergyMethodRegistrator< scoring::sym_e::symECreator > core::init::symECreator_registrator

static

◆ SymmDataLoaderCreator_registrator

ResourceLoaderRegistrator< core::conformation::symmetry::SymmDataLoaderCreator > core::init::SymmDataLoaderCreator_registrator

static

◆ SymmetricLigandEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::SymmetricLigandEnergyCreator > core::init::SymmetricLigandEnergyCreator_registrator

static

◆ TNA_SuiteEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::TNA_SuiteEnergyCreator > core::init::TNA_SuiteEnergyCreator_registrator

static

◆ UnfoldedStateEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::UnfoldedStateEnergyCreator > core::init::UnfoldedStateEnergyCreator_registrator

static

◆ UseMultiCoolAnnealerCreator_registrator

TaskOperationRegistrator< UseMultiCoolAnnealerCreator > core::init::UseMultiCoolAnnealerCreator_registrator

static

◆ VDW_EnergyCreator_registrator

EnergyMethodRegistrator< scoring::vdwaals::VDW_EnergyCreator > core::init::VDW_EnergyCreator_registrator

static

◆ VdWTinkerEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::VdWTinkerEnergyCreator > core::init::VdWTinkerEnergyCreator_registrator

static

◆ VoidsPenaltyEnergyCreator_registrator

EnergyMethodRegistrator< pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyEnergyCreator > core::init::VoidsPenaltyEnergyCreator_registrator

static

◆ WaterAdductHBondEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::WaterAdductHBondEnergyCreator > core::init::WaterAdductHBondEnergyCreator_registrator

static

◆ WaterAdductIntraEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::WaterAdductIntraEnergyCreator > core::init::WaterAdductIntraEnergyCreator_registrator

static

◆ WaterSpecificEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::WaterSpecificEnergyCreator > core::init::WaterSpecificEnergyCreator_registrator

static

◆ XtalMLEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::XtalMLEnergyCreator > core::init::XtalMLEnergyCreator_registrator

static

◆ YYHPlanarityEnergyCreator_registrator

EnergyMethodRegistrator< energy_methods::YHHPlanarityEnergyCreator > core::init::YYHPlanarityEnergyCreator_registrator

static

Classes

Functions

Variables

Function Documentation

◆ check_deprecated_flags()

◆ check_load_fconfig()

◆ init() [1/2]

◆ init() [2/2]

◆ init_beta_correction()

◆ init_beta_july15_correction()

◆ init_beta_nov16_correction()

◆ init_complex_options()

◆ init_correct_correction()

◆ init_crash_reporter()

◆ init_crystal_refinement_correction()

◆ init_dna_correction()

◆ init_facts_correction()

◆ init_gen_potential_settings()

◆ init_hbond_sp2_correction()

◆ init_mpi() [1/2]

◆ init_mpi() [2/2]

◆ init_nonideal_correction()

◆ init_options()

◆ init_paths()

◆ init_pre_beta_nov15_etable()

◆ init_profiling()

◆ init_resources()

◆ init_restore_score12prime()

◆ init_revert_to_pre_talaris_2013_mistake()

◆ init_revert_to_talaris()

◆ init_score_function_corrections()

◆ init_shapovalov_lib_fixes_enable_correction()

◆ init_source_revision()

◆ init_spades_score_function_correction()

◆ init_tracers()

◆ locate_rosetta_database()

◆ random_delay()

◆ report_application_command()

◆ revert_to_pre_talaris_2013_defaults()

◆ TR() [1/2]

◆ TR() [2/2]

Variable Documentation

◆ AACompositionEnergyCreator_registrator

◆ AARepeatEnergyCreator_registrator

◆ AbegoEnergyCreator_registrator

◆ AddBehaviorRLTCreator_registrator

◆ AllResFilterCreator_registrator

◆ AmbiguousConstraintCreator_registrator

◆ AmbiguousNMRConstraintCreator_registrator

◆ AmbiguousNMRDistanceConstraintCreator_registrator

◆ AngleConstraintCreator_registrator

◆ AnyResFilterCreator_registrator

◆ AppendRotamerCreator_registrator

◆ AppendRotamerSetCreator_registrator

◆ ApproximateBuriedUnsatPenaltyCreator_registrator

◆ ArgCationPiEnergyCreator_registrator

◆ AromaticBackboneRestraintEnergyCreator_registrator

◆ AspartimidePenaltyEnergyCreator_registrator

◆ AtomPairConstraintCreator_registrator

◆ BasePairConstraintCreator_registrator

◆ BasicRotamerLibrarySpecificationCreator_registrator

◆ BigBinConstraintCreator_registrator

◆ BinarySilentStructCreator_registrator

◆ BranchEnergyCreator_registrator

◆ Burial_v2Creator_registrator

◆ BurialCreator_registrator

◆ BuriedUnsatPenaltyCreator_registrator

◆ CarbonHBondEnergyCreator_registrator

◆ CartesianBondedEnergyCreator_registrator

◆ CCS_IMMSEnergyCreator_registrator

◆ CenHBEnergyCreator_registrator

◆ CenPairEnergyCreator_registrator

◆ CenPairMotifDegreeEnergyCreator_registrator

◆ CenPairMotifEnergyCreator_registrator

◆ CenRotDunEnergyCreator_registrator

◆ CenRotEnvEnergyCreator_registrator

◆ CenRotPairEnergyCreator_registrator

◆ CenrotRotamerLibrarySpecificationCreator_registrator

◆ CentroidDisulfideEnergyCreator_registrator

◆ ChainbreakEnergyCreator_registrator