protocols::symmetry Namespace Reference

Classes
class	DetectSymmetry
class	DetectSymmetryMoverCreator
class	SetupForSequenceSymmetryMover
class	SetupForSequenceSymmetryMoverCreator
class	SetupForSymmetryMover
class	ExtractAsymmetricUnitMover
	Extract the Asymmetric unit only from the pose. This is the pose that would have existed before symmetrization. More...
class	ExtractAsymmetricPoseMover
class	SetupForSymmetryMoverCreator
class	ExtractAsymmetricUnitMoverCreator
class	ExtractAsymmetricPoseMoverCreator
class	NCSResMapping
class	SetupNCSMover
class	SetupNCSMoverCreator
class	SymDockingInitialPerturbation
class	SymDockingSlideIntoContact
	Contrary to the name, slides things apart first, then together. More...
class	FaSymDockingSlideTogether
	Slides docking partners together by monitoring fa_rep. More...
class	SymmetrySlider
class	SequentialSymmetrySlider
class	OrderedSequentialSymmetrySlider
class	RandomSymmetrySlider
class	SymmetricRMSMover
class	SymShakeStructureMover

Typedefs
typedef utility::pointer::shared_ptr< DetectSymmetryMover >	DetectSymmetryMoverOP
typedef utility::pointer::shared_ptr< DetectSymmetryMover const >	DetectSymmetryMoverCOP
using	SetupForSequenceSymmetryMoverOP = utility::pointer::shared_ptr< SetupForSequenceSymmetryMover >
using	SetupForSequenceSymmetryMoverCOP = utility::pointer::shared_ptr< SetupForSequenceSymmetryMover const >
typedef utility::pointer::shared_ptr< SetupForSymmetryMover >	SetupForSymmetryMoverOP
typedef utility::pointer::shared_ptr< SetupForSymmetryMover const >	SetupForSymmetryMoverCOP
typedef utility::pointer::shared_ptr< SetupForSymmetryMover >	ExtractAsymmetricUnitMoverOP
typedef utility::pointer::shared_ptr< SetupForSymmetryMover const >	ExtractAsymmetricUnitMoverCOP
typedef utility::pointer::shared_ptr< ExtractAsymmetricPoseMover >	ExtractAsymmetricPoseMoverOP
typedef utility::pointer::shared_ptr< ExtractAsymmetricPoseMover const >	ExtractAsymmetricPoseMoverCOP
typedef utility::pointer::shared_ptr< SetupNCSMover >	SetupNCSMoverOP
typedef utility::pointer::shared_ptr< SetupNCSMover const >	SetupNCSMoverCOP
typedef utility::pointer::shared_ptr< NCSResMapping >	NCSResMappingOP
typedef utility::pointer::shared_ptr< NCSResMapping const >	NCSResMappingCOP
typedef utility::pointer::shared_ptr< SymDockingInitialPerturbation >	SymDockingInitialPerturbationOP
typedef utility::pointer::shared_ptr< SymDockingInitialPerturbation const >	SymDockingInitialPerturbationCOP
typedef utility::pointer::shared_ptr< FaSymDockingSlideTogether >	FaSymDockingSlideTogetherOP
typedef utility::pointer::shared_ptr< FaSymDockingSlideTogether const >	FaSymDockingSlideTogetherCOP
typedef utility::pointer::shared_ptr< SymmetrySlider >	SymmetrySliderOP
typedef utility::pointer::shared_ptr< SymmetrySlider const >	SymmetrySliderCOP
typedef utility::pointer::shared_ptr< SequentialSymmetrySlider >	SequentialSymmetrySliderOP
typedef utility::pointer::shared_ptr< SequentialSymmetrySlider const >	SequentialSymmetrySliderCOP
typedef utility::pointer::shared_ptr< OrderedSequentialSymmetrySlider >	OrderedSequentialSymmetrySliderOP
typedef utility::pointer::shared_ptr< OrderedSequentialSymmetrySlider const >	OrderedSequentialSymmetrySliderCOP
typedef utility::pointer::shared_ptr< RandomSymmetrySlider >	RandomSymmetrySliderOP
typedef utility::pointer::shared_ptr< RandomSymmetrySlider const >	RandomSymmetrySliderCOP
typedef utility::pointer::shared_ptr< SymmetricRMSMover >	SymmetricRMSMoverOP
typedef utility::pointer::shared_ptr< SymmetricRMSMover const >	SymmetricRMSMoverCOP
typedef utility::pointer::shared_ptr< SymShakeStructureMover >	SymShakeStructureMoverOP
typedef utility::pointer::shared_ptr< SymShakeStructureMover const >	SymShakeStructureMoverCOP

Functions
static basic::Tracer	TR ("protocols.simple_moves.symmetry.DetectSymmetry")
static basic::Tracer	TR ("protocols.simple_moves.symmetry.SetupForSequenceSymmetryMover")
static basic::Tracer	TR ("protocols.simple_moves.symmetry.SetupForSymmetryMover")
static basic::Tracer	TZ ("protocols.simple_moves.symmetry.SetupNCSMover")
static basic::Tracer	TR ("protocols.simple_moves.symmetry.SymmetricRMSMover")

Typedef Documentation

DetectSymmetryMoverCOP

typedef utility::pointer::shared_ptr< DetectSymmetryMover const > protocols::symmetry::DetectSymmetryMoverCOP

DetectSymmetryMoverOP

typedef utility::pointer::shared_ptr< DetectSymmetryMover > protocols::symmetry::DetectSymmetryMoverOP

ExtractAsymmetricPoseMoverCOP

typedef utility::pointer::shared_ptr< ExtractAsymmetricPoseMover const > protocols::symmetry::ExtractAsymmetricPoseMoverCOP

ExtractAsymmetricPoseMoverOP

typedef utility::pointer::shared_ptr< ExtractAsymmetricPoseMover > protocols::symmetry::ExtractAsymmetricPoseMoverOP

ExtractAsymmetricUnitMoverCOP

typedef utility::pointer::shared_ptr< SetupForSymmetryMover const > protocols::symmetry::ExtractAsymmetricUnitMoverCOP

ExtractAsymmetricUnitMoverOP

typedef utility::pointer::shared_ptr< SetupForSymmetryMover > protocols::symmetry::ExtractAsymmetricUnitMoverOP

FaSymDockingSlideTogetherCOP

typedef utility::pointer::shared_ptr< FaSymDockingSlideTogether const > protocols::symmetry::FaSymDockingSlideTogetherCOP

FaSymDockingSlideTogetherOP

typedef utility::pointer::shared_ptr< FaSymDockingSlideTogether > protocols::symmetry::FaSymDockingSlideTogetherOP

NCSResMappingCOP

typedef utility::pointer::shared_ptr< NCSResMapping const > protocols::symmetry::NCSResMappingCOP

NCSResMappingOP

typedef utility::pointer::shared_ptr< NCSResMapping > protocols::symmetry::NCSResMappingOP

OrderedSequentialSymmetrySliderCOP

typedef utility::pointer::shared_ptr< OrderedSequentialSymmetrySlider const > protocols::symmetry::OrderedSequentialSymmetrySliderCOP

OrderedSequentialSymmetrySliderOP

typedef utility::pointer::shared_ptr< OrderedSequentialSymmetrySlider > protocols::symmetry::OrderedSequentialSymmetrySliderOP

RandomSymmetrySliderCOP

typedef utility::pointer::shared_ptr< RandomSymmetrySlider const > protocols::symmetry::RandomSymmetrySliderCOP

RandomSymmetrySliderOP

typedef utility::pointer::shared_ptr< RandomSymmetrySlider > protocols::symmetry::RandomSymmetrySliderOP

SequentialSymmetrySliderCOP

typedef utility::pointer::shared_ptr< SequentialSymmetrySlider const > protocols::symmetry::SequentialSymmetrySliderCOP

SequentialSymmetrySliderOP

typedef utility::pointer::shared_ptr< SequentialSymmetrySlider > protocols::symmetry::SequentialSymmetrySliderOP

SetupForSequenceSymmetryMoverCOP

using protocols::symmetry::SetupForSequenceSymmetryMoverCOP = typedef utility::pointer::shared_ptr< SetupForSequenceSymmetryMover const >

SetupForSequenceSymmetryMoverOP

using protocols::symmetry::SetupForSequenceSymmetryMoverOP = typedef utility::pointer::shared_ptr< SetupForSequenceSymmetryMover >

SetupForSymmetryMoverCOP

typedef utility::pointer::shared_ptr< SetupForSymmetryMover const > protocols::symmetry::SetupForSymmetryMoverCOP

SetupForSymmetryMoverOP

typedef utility::pointer::shared_ptr< SetupForSymmetryMover > protocols::symmetry::SetupForSymmetryMoverOP

SetupNCSMoverCOP

typedef utility::pointer::shared_ptr< SetupNCSMover const > protocols::symmetry::SetupNCSMoverCOP

SetupNCSMoverOP

typedef utility::pointer::shared_ptr< SetupNCSMover > protocols::symmetry::SetupNCSMoverOP

SymDockingInitialPerturbationCOP

typedef utility::pointer::shared_ptr< SymDockingInitialPerturbation const > protocols::symmetry::SymDockingInitialPerturbationCOP

SymDockingInitialPerturbationOP

typedef utility::pointer::shared_ptr< SymDockingInitialPerturbation > protocols::symmetry::SymDockingInitialPerturbationOP

SymmetricRMSMoverCOP

typedef utility::pointer::shared_ptr< SymmetricRMSMover const > protocols::symmetry::SymmetricRMSMoverCOP

SymmetricRMSMoverOP

typedef utility::pointer::shared_ptr< SymmetricRMSMover > protocols::symmetry::SymmetricRMSMoverOP

SymmetrySliderCOP

typedef utility::pointer::shared_ptr< SymmetrySlider const > protocols::symmetry::SymmetrySliderCOP

SymmetrySliderOP

typedef utility::pointer::shared_ptr< SymmetrySlider > protocols::symmetry::SymmetrySliderOP

SymShakeStructureMoverCOP

typedef utility::pointer::shared_ptr< SymShakeStructureMover const > protocols::symmetry::SymShakeStructureMoverCOP

SymShakeStructureMoverOP

typedef utility::pointer::shared_ptr< SymShakeStructureMover > protocols::symmetry::SymShakeStructureMoverOP

Function Documentation

TR() [1/4]

static basic::Tracer protocols::symmetry::TR ( "protocols.simple_moves.symmetry.DetectSymmetry"  )

static

Referenced by protocols::symmetry::SetupForSequenceSymmetryMover::apply(), protocols::symmetry::ExtractAsymmetricPoseMover::apply(), protocols::symmetry::SymDockingInitialPerturbation::apply(), protocols::symmetry::SymDockingSlideIntoContact::apply(), protocols::symmetry::DetectSymmetry::apply(), protocols::symmetry::SymmetrySlider::continue_slide(), protocols::symmetry::SetupForSequenceSymmetryMover::parse_my_tag(), protocols::symmetry::SetupForSymmetryMover::parse_my_tag(), protocols::symmetry::SequentialSymmetrySlider::select_jump(), protocols::symmetry::SymmetrySlider::set_current_jump(), protocols::symmetry::SymmetrySlider::setup(), protocols::symmetry::SymmetrySlider::slide(), protocols::symmetry::SymmetrySlider::slide_away(), and protocols::symmetry::SymmetrySlider::very_far_away().

TR() [2/4]

static basic::Tracer protocols::symmetry::TR ( "protocols.simple_moves.symmetry.SetupForSequenceSymmetryMover"  )

static

TR() [3/4]

static basic::Tracer protocols::symmetry::TR ( "protocols.simple_moves.symmetry.SetupForSymmetryMover"  )

static

TR() [4/4]

static basic::Tracer protocols::symmetry::TR ( "protocols.simple_moves.symmetry.SymmetricRMSMover"  )

static

TZ()

static basic::Tracer protocols::symmetry::TZ ( "protocols.simple_moves.symmetry.SetupNCSMover"  )

static

Referenced by protocols::symmetry::SetupNCSMover::apply(), and protocols::symmetry::SetupNCSMover::parse_my_tag().