protocols::fldsgn Namespace Reference

Namespaces
	filters
	potentials
	topology

Classes
class	BluePrintBDR
class	BluePrintBDRCreator
class	CircularPermutation
class	CircularPermutationCreator
class	MatchResidues
class	MatchResiduesMover
class	MatchResiduesMoverCreator
class	MyAtom
class	NcontactsCalculator
struct	ResiduePair
class	SheetConstraintGenerator
class	SheetConstraintGeneratorCreator
class	SheetRemodelConstraintGenerator
	Remodel constraint generator for adding sheet constraints. More...
class	SheetRemodelConstraintGeneratorCreator

Typedefs
typedef utility::pointer::shared_ptr< BluePrintBDR >	BluePrintBDR_OP
	BluePrintBDR owning pointer. More...
typedef utility::pointer::shared_ptr< BluePrintBDR const >	BluePrintBDR_COP
	BluePrintBDR const owning pointer. More...
typedef utility::pointer::weak_ptr< BluePrintBDR >	BluePrintBDR_AP
	BluePrintBDR access pointer. More...
typedef utility::pointer::weak_ptr< BluePrintBDR const >	BluePrintBDR_CAP
	BluePrintBDR const access pointer. More...
typedef utility::pointer::shared_ptr< CircularPermutation >	CircularPermutation_OP
	CircularPermutation owning pointer. More...
typedef utility::pointer::shared_ptr< CircularPermutation const >	CircularPermutation_COP
	CircularPermutation const owning pointer. More...
typedef utility::pointer::weak_ptr< CircularPermutation >	CircularPermutation_AP
	CircularPermutation access pointer. More...
typedef utility::pointer::weak_ptr< CircularPermutation const >	CircularPermutation_CAP
	CircularPermutation const access pointer. More...
using	VecSize = utility::vector1< core::Size >
using	VecVecSize = utility::vector1< VecSize >
typedef utility::pointer::shared_ptr< MatchResiduesMover >	MatchResiduesMoverOP
typedef utility::pointer::shared_ptr< MatchResiduesMover const >	MatchResiduesMoverCOP
typedef utility::pointer::shared_ptr< SetAACompositionPotential >	SetAACompositionPotential_OP
	SetAACompositionPotential owning pointer. More...
typedef utility::pointer::shared_ptr< SetAACompositionPotential const >	SetAACompositionPotential_COP
	SetAACompositionPotential const owning pointer. More...
typedef utility::pointer::weak_ptr< SetAACompositionPotential >	SetAACompositionPotential_AP
	SetAACompositionPotential access pointer. More...
typedef utility::pointer::weak_ptr< SetAACompositionPotential const >	SetAACompositionPotential_CAP
	SetAACompositionPotential const access pointer. More...
typedef utility::pointer::shared_ptr< SheetConstraintGenerator >	SheetConstraintGeneratorOP
typedef utility::pointer::shared_ptr< SheetConstraintGenerator const >	SheetConstraintGeneratorCOP
typedef utility::vector1< ResiduePair >	ResiduePairs
typedef utility::pointer::shared_ptr< SheetRemodelConstraintGenerator >	SheetRemodelConstraintGeneratorOP
typedef utility::pointer::shared_ptr< SheetRemodelConstraintGenerator const >	SheetRemodelConstraintGeneratorCOP

Functions
static basic::Tracer	TR ("protocols.fldsgn.BluePrintBDR")
static basic::Tracer	TR ("protocols.fldsgn.CircularPermutation")
std::string	subtag_for_match_type (std::string const &foo)

Typedef Documentation

BluePrintBDR_AP

typedef utility::pointer::weak_ptr< BluePrintBDR > protocols::fldsgn::BluePrintBDR_AP

BluePrintBDR access pointer.

BluePrintBDR_CAP

typedef utility::pointer::weak_ptr< BluePrintBDR const > protocols::fldsgn::BluePrintBDR_CAP

BluePrintBDR const access pointer.

BluePrintBDR_COP

typedef utility::pointer::shared_ptr< BluePrintBDR const > protocols::fldsgn::BluePrintBDR_COP

BluePrintBDR const owning pointer.

BluePrintBDR_OP

typedef utility::pointer::shared_ptr< BluePrintBDR > protocols::fldsgn::BluePrintBDR_OP

BluePrintBDR owning pointer.

CircularPermutation_AP

typedef utility::pointer::weak_ptr< CircularPermutation > protocols::fldsgn::CircularPermutation_AP

CircularPermutation access pointer.

CircularPermutation_CAP

typedef utility::pointer::weak_ptr< CircularPermutation const > protocols::fldsgn::CircularPermutation_CAP

CircularPermutation const access pointer.

CircularPermutation_COP

typedef utility::pointer::shared_ptr< CircularPermutation const > protocols::fldsgn::CircularPermutation_COP

CircularPermutation const owning pointer.

CircularPermutation_OP

typedef utility::pointer::shared_ptr< CircularPermutation > protocols::fldsgn::CircularPermutation_OP

CircularPermutation owning pointer.

MatchResiduesMoverCOP

typedef utility::pointer::shared_ptr< MatchResiduesMover const > protocols::fldsgn::MatchResiduesMoverCOP

MatchResiduesMoverOP

typedef utility::pointer::shared_ptr< MatchResiduesMover > protocols::fldsgn::MatchResiduesMoverOP

ResiduePairs

typedef utility::vector1< ResiduePair > protocols::fldsgn::ResiduePairs

SetAACompositionPotential_AP

typedef utility::pointer::weak_ptr< SetAACompositionPotential > protocols::fldsgn::SetAACompositionPotential_AP

SetAACompositionPotential access pointer.

SetAACompositionPotential_CAP

typedef utility::pointer::weak_ptr< SetAACompositionPotential const > protocols::fldsgn::SetAACompositionPotential_CAP

SetAACompositionPotential const access pointer.

SetAACompositionPotential_COP

typedef utility::pointer::shared_ptr< SetAACompositionPotential const > protocols::fldsgn::SetAACompositionPotential_COP

SetAACompositionPotential const owning pointer.

SetAACompositionPotential_OP

typedef utility::pointer::shared_ptr< SetAACompositionPotential > protocols::fldsgn::SetAACompositionPotential_OP

SetAACompositionPotential owning pointer.

SheetConstraintGeneratorCOP

typedef utility::pointer::shared_ptr< SheetConstraintGenerator const > protocols::fldsgn::SheetConstraintGeneratorCOP

SheetConstraintGeneratorOP

typedef utility::pointer::shared_ptr< SheetConstraintGenerator > protocols::fldsgn::SheetConstraintGeneratorOP

SheetRemodelConstraintGeneratorCOP

typedef utility::pointer::shared_ptr< SheetRemodelConstraintGenerator const > protocols::fldsgn::SheetRemodelConstraintGeneratorCOP

SheetRemodelConstraintGeneratorOP

typedef utility::pointer::shared_ptr< SheetRemodelConstraintGenerator > protocols::fldsgn::SheetRemodelConstraintGeneratorOP

VecSize

using protocols::fldsgn::VecSize = typedef utility::vector1<core::Size>

VecVecSize

using protocols::fldsgn::VecVecSize = typedef utility::vector1<VecSize>

Function Documentation

subtag_for_match_type()

std::string protocols::fldsgn::subtag_for_match_type

(

std::string const &

foo

)

Referenced by protocols::fldsgn::MatchResidues::provide_attributes_and_subelements().

TR() [1/2]

static basic::Tracer protocols::fldsgn::TR ( "protocols.fldsgn.BluePrintBDR"  )

static

Referenced by protocols::fldsgn::filters::HelixBendFilter::apply(), protocols::fldsgn::filters::StrandCurvatureByLevels::apply(), protocols::fldsgn::filters::StrandHelixGeometryFilter::apply(), protocols::fldsgn::SheetConstraintGenerator::apply(), protocols::fldsgn::BluePrintBDR::apply(), protocols::fldsgn::CircularPermutation::apply(), protocols::fldsgn::filters::HelixKinkFilter::apply(), protocols::fldsgn::filters::HelixPairingFilter::apply(), protocols::fldsgn::filters::HSSTripletFilter::apply(), protocols::fldsgn::topology::BetaAlphaBetaMotif::calc_helix_cycle(), protocols::fldsgn::BluePrintBDR::centroid_build(), protocols::fldsgn::filters::HSSTripletFilter::check_elements(), protocols::fldsgn::filters::HelixBendFilter::compute(), protocols::fldsgn::MatchResidues::compute(), protocols::fldsgn::filters::HelixPairingFilter::compute(), protocols::fldsgn::filters::HSSTripletFilter::compute(), protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter::compute(), protocols::fldsgn::topology::compute_bulges(), protocols::fldsgn::filters::HelixPairingFilter::compute_helix_pairing_set(), protocols::fldsgn::SheetConstraintGenerator::compute_residue_pairs(), protocols::fldsgn::filters::HSSTripletFilter::get_hss3s(), protocols::fldsgn::topology::SheetSet::initialize(), protocols::fldsgn::topology::StrandPairingSet::initialize_by_dimer_pairs(), protocols::fldsgn::SheetConstraintGenerator::initialize_from_blueprint(), protocols::fldsgn::MatchResidues::parse_my_tag(), protocols::fldsgn::filters::HelixPairingFilter::parse_my_tag(), protocols::fldsgn::filters::HSSTripletFilter::parse_my_tag(), protocols::fldsgn::BluePrintBDR::parse_my_tag(), protocols::fldsgn::topology::HSSTripletSet::push_back(), protocols::fldsgn::topology::StrandPairing::redefine_begin_end(), protocols::fldsgn::filters::HelixBendFilter::report(), protocols::fldsgn::filters::HelixBendFilter::report_sm(), protocols::fldsgn::topology::BetaAlphaBetaMotifSet::set_babmotifs(), protocols::fldsgn::filters::HelixKinkFilter::set_helix_range(), protocols::fldsgn::BluePrintBDR::set_instruction_blueprint(), and protocols::fldsgn::filters::HelixKinkFilter::set_resnums().

TR() [2/2]

static basic::Tracer protocols::fldsgn::TR ( "protocols.fldsgn.CircularPermutation"  )

static