protocols::symmetric_docking Namespace Reference

Namespaces
	membrane

Classes
class	SymDockBaseProtocol
class	SymDockingHiRes
class	SymDockingLowRes
class	SymDockProtocol
	Main Symmetric Docking protocol class. More...
class	SymDockProtocolCreator
class	SymFoldandDockRbTrialMoverCreator
class	SymFoldandDockSlideTrialMoverCreator
class	SymFoldandDockMoveRbJumpMoverCreator
class	SymFoldandDockMoveRbJumpMover
class	SymFoldandDockRbTrialMover
class	SymFoldandDockSlideTrialMover
class	SymRestrictTaskForDocking
class	SymSidechainMinMover
class	SymInterfaceSidechainMinMover

Typedefs
typedef utility::pointer::shared_ptr< SymDockingHiRes >	SymDockingHiResOP
typedef utility::pointer::shared_ptr< SymDockingHiRes const >	SymDockingHiResCOP
typedef utility::pointer::shared_ptr< SymDockingLowRes >	SymDockingLowResOP
typedef utility::pointer::shared_ptr< SymDockingLowRes const >	SymDockingLowResCOP
typedef utility::pointer::shared_ptr< SymDockProtocol >	SymDockProtocolOP
typedef utility::pointer::shared_ptr< SymDockProtocol const >	SymDockProtocolCOP
typedef utility::pointer::shared_ptr< SymFoldandDockMoveRbJumpMover >	SymFoldandDockMoveRbJumpMoverOP
typedef utility::pointer::shared_ptr< SymFoldandDockMoveRbJumpMover const >	SymFoldandDockMoveRbJumpMoverCOP
typedef utility::pointer::shared_ptr< SymFoldandDockRbTrialMover >	SymFoldandDockRbTrialMoverOP
typedef utility::pointer::shared_ptr< SymFoldandDockRbTrialMover const >	SymFoldandDockRbTrialMoverCOP
typedef utility::pointer::shared_ptr< SymFoldandDockSlideTrialMover >	SymFoldandDockSlideTrialMoverOP
typedef utility::pointer::shared_ptr< SymFoldandDockSlideTrialMover const >	SymFoldandDockSlideTrialMoverCOP
typedef utility::pointer::shared_ptr< SymRestrictTaskForDocking >	SymRestrictTaskForDockingOP
typedef utility::pointer::shared_ptr< SymSidechainMinMover >	SymSidechainMinMoverOP
typedef utility::pointer::shared_ptr< SymSidechainMinMover >	SymSidechainMinMoverCOP
typedef utility::pointer::shared_ptr< SymInterfaceSidechainMinMover >	SymInterfaceSidechainMinMoverOP
typedef utility::pointer::shared_ptr< SymInterfaceSidechainMinMover >	SymInterfaceSidechainMinMoverCOP

Functions
static basic::Tracer	TR ("protocols.symmetric_docking.SymDockBaseProtocol")
static basic::Tracer	TR ("protocols.symmetric_docking.SymDockProtocol")
void	SymDock_main ()
	Define Main funciton for symmetric docking protocol. More...
static basic::Tracer	TR ("protocols.moves.symmetry.SymFoldandDockMoveRbJumpMover")
static basic::Tracer	TR ("protocols.moves.symmetry.SymFoldandDockRbTrialMover")
static basic::Tracer	TR ("protocols.moves.symmetry.SymFoldandDockSlideTrialMover")

Typedef Documentation

SymDockingHiResCOP

typedef utility::pointer::shared_ptr< SymDockingHiRes const > protocols::symmetric_docking::SymDockingHiResCOP

SymDockingHiResOP

typedef utility::pointer::shared_ptr< SymDockingHiRes > protocols::symmetric_docking::SymDockingHiResOP

SymDockingLowResCOP

typedef utility::pointer::shared_ptr< SymDockingLowRes const > protocols::symmetric_docking::SymDockingLowResCOP

SymDockingLowResOP

typedef utility::pointer::shared_ptr< SymDockingLowRes > protocols::symmetric_docking::SymDockingLowResOP

SymDockProtocolCOP

typedef utility::pointer::shared_ptr< SymDockProtocol const > protocols::symmetric_docking::SymDockProtocolCOP

SymDockProtocolOP

typedef utility::pointer::shared_ptr< SymDockProtocol > protocols::symmetric_docking::SymDockProtocolOP

SymFoldandDockMoveRbJumpMoverCOP

typedef utility::pointer::shared_ptr< SymFoldandDockMoveRbJumpMover const > protocols::symmetric_docking::SymFoldandDockMoveRbJumpMoverCOP

SymFoldandDockMoveRbJumpMoverOP

typedef utility::pointer::shared_ptr< SymFoldandDockMoveRbJumpMover > protocols::symmetric_docking::SymFoldandDockMoveRbJumpMoverOP

SymFoldandDockRbTrialMoverCOP

typedef utility::pointer::shared_ptr< SymFoldandDockRbTrialMover const > protocols::symmetric_docking::SymFoldandDockRbTrialMoverCOP

SymFoldandDockRbTrialMoverOP

typedef utility::pointer::shared_ptr< SymFoldandDockRbTrialMover > protocols::symmetric_docking::SymFoldandDockRbTrialMoverOP

SymFoldandDockSlideTrialMoverCOP

typedef utility::pointer::shared_ptr< SymFoldandDockSlideTrialMover const > protocols::symmetric_docking::SymFoldandDockSlideTrialMoverCOP

SymFoldandDockSlideTrialMoverOP

typedef utility::pointer::shared_ptr< SymFoldandDockSlideTrialMover > protocols::symmetric_docking::SymFoldandDockSlideTrialMoverOP

SymInterfaceSidechainMinMoverCOP

typedef utility::pointer::shared_ptr< SymInterfaceSidechainMinMover > protocols::symmetric_docking::SymInterfaceSidechainMinMoverCOP

SymInterfaceSidechainMinMoverOP

typedef utility::pointer::shared_ptr< SymInterfaceSidechainMinMover > protocols::symmetric_docking::SymInterfaceSidechainMinMoverOP

SymRestrictTaskForDockingOP

typedef utility::pointer::shared_ptr< SymRestrictTaskForDocking > protocols::symmetric_docking::SymRestrictTaskForDockingOP

SymSidechainMinMoverCOP

typedef utility::pointer::shared_ptr< SymSidechainMinMover > protocols::symmetric_docking::SymSidechainMinMoverCOP

SymSidechainMinMoverOP

typedef utility::pointer::shared_ptr< SymSidechainMinMover > protocols::symmetric_docking::SymSidechainMinMoverOP

Function Documentation

SymDock_main()

void protocols::symmetric_docking::SymDock_main

(

)

Define Main funciton for symmetric docking protocol.

References protocols::jd2::JobDistributor::get_instance(), and protocols::jd2::JobDistributor::go().

TR() [1/5]

static basic::Tracer protocols::symmetric_docking::TR ( "protocols.moves.symmetry.SymFoldandDockMoveRbJumpMover"  )

static

TR() [2/5]

static basic::Tracer protocols::symmetric_docking::TR ( "protocols.moves.symmetry.SymFoldandDockRbTrialMover"  )

static

TR() [3/5]

static basic::Tracer protocols::symmetric_docking::TR ( "protocols.moves.symmetry.SymFoldandDockSlideTrialMover"  )

static

TR() [4/5]

static basic::Tracer protocols::symmetric_docking::TR ( "protocols.symmetric_docking.SymDockBaseProtocol"  )

static

Referenced by protocols::symmetric_docking::SymDockingHiRes::apply(), protocols::symmetric_docking::SymDockingLowRes::apply(), protocols::symmetric_docking::SymDockProtocol::apply(), protocols::symmetric_docking::SymFoldandDockRbTrialMover::apply(), protocols::symmetric_docking::SymFoldandDockSlideTrialMover::apply(), protocols::symmetric_docking::SymDockProtocol::calc_CAPRI_rank(), protocols::symmetric_docking::SymDockProtocol::calc_fnat(), protocols::symmetric_docking::SymDockProtocol::calc_Irms(), protocols::symmetric_docking::SymDockProtocol::docking_highres_filter(), protocols::symmetric_docking::SymDockProtocol::docking_lowres_filter(), protocols::symmetric_docking::SymDockProtocol::recover_sidechains(), protocols::symmetric_docking::SymDockingLowRes::set_default_protocol(), protocols::symmetric_docking::SymDockingHiRes::set_dock_mcm_protocol(), protocols::symmetric_docking::SymDockingHiRes::set_dock_min_protocol(), protocols::symmetric_docking::SymDockingHiRes::set_dock_ppk_protocol(), and protocols::symmetric_docking::SymDockingHiRes::setup_packing().

TR() [5/5]

static basic::Tracer protocols::symmetric_docking::TR ( "protocols.symmetric_docking.SymDockProtocol"  )

static